Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30902
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    62   3e-11
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    60   9e-11
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   2.4  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    25   3.2  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    24   5.5  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     24   7.3  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    23   9.6  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    23   9.6  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    23   9.6  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 61.7 bits (143), Expect = 3e-11
 Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
 Frame = +3

Query: 51  NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYF 230
           + KGIP+FW    +NV  LSEM+   DE  L  L DI++   E P  F LEF FA N +F
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFF 218

Query: 231 TN---TSTY 248
           TN   T TY
Sbjct: 219 TNKILTKTY 227


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 60.1 bits (139), Expect = 9e-11
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
 Frame = +3

Query: 48  PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNE 224
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220

Query: 225 YFTN---TSTY 248
           YFTN   T TY
Sbjct: 221 YFTNKILTKTY 231


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 29  YRASNGSQCKGYPRLLVQHIQEC 97
           YR SNG   + Y  L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 199 WNSTLLQMNTSQIPVLTKDT**SASPMKRVH*NLKVLKFILDKGC 333
           W++   Q N S +P LTKD       +KR+  NL     +LD GC
Sbjct: 6   WSAKDYQRNASFVPKLTKDI------VKRI--NLSSSDELLDLGC 42


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +3

Query: 189 SFTLEFYFA----PNEYFTNTSTY*RYLMKCKPDEESP 290
           SF LE Y+     P +Y T T  Y   L K KP+  +P
Sbjct: 210 SFDLEGYWMDVGQPKDYLTGTCLYLSSLRKHKPEILAP 247


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 78  YNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI--SFTLEFYFAPNEYFTNTSTY 248
           Y +F     + E   + DE +L    +  ++  +D I  S +  F   P E+FT+T  Y
Sbjct: 191 YELFLAKRSMFEQFAKIDERVLSW--EFLLRNEQDRILGSVSRNFMGLPREFFTDTGNY 247


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 111 EMMQEHDEPILKCLQDIKVQMHED 182
           E + +  + +L+  ++ K+QMHED
Sbjct: 209 ESIPQSTKDLLRIWKEAKIQMHED 232


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 135 PILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTSTY*RYLMKCKPD 278
           P +  L +I + + E    + LE       Y  +  TY RYL++C  D
Sbjct: 23  PTVDELFEIAIDLEESGDRWRLEPAKCLRFYQKSLETYDRYLLQCPND 70


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 94  FLNMLYQKSGIPFT 53
           +LN+L +KSG+PF+
Sbjct: 299 YLNILVKKSGMPFS 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,050
Number of Sequences: 5004
Number of extensions: 27073
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)