Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30902
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255...    71   2e-13
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    69   1e-12
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    66   9e-12
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746...    62   1e-10
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186...    52   9e-08
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720...    45   2e-05
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820...    27   2.8  
02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430...    27   3.8  
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455...    26   6.6  

>06_01_0356 +
           2557127-2557193,2557272-2557315,2557433-2557528,
           2559259-2559351,2559450-2559540,2559617-2559678,
           2559754-2559938,2560022-2560199,2560293-2560336,
           2560440-2560635,2560728-2560745,2560955-2561005
          Length = 374

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 38/96 (39%), Positives = 53/96 (55%)
 Frame = +3

Query: 6   EEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDP 185
           +E   + A E   D + KG+PDFW    +   +LSE +QE DEP LK L+DIK    +DP
Sbjct: 116 DEPASENAAEGK-DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDP 174

Query: 186 ISFTLEFYFAPNEYFTNTSTY*RYLMKCKPDEESPL 293
             F L+F+F  N +F N+     Y M    DE+ P+
Sbjct: 175 KGFKLDFFFDTNPFFKNSVLTKTYHM---VDEDEPI 207


>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 36/86 (41%), Positives = 47/86 (54%)
 Frame = +3

Query: 36  PPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFA 215
           P      KG+P+FW N  +N  +LSE +QE DE  LK L+DIK     +P  F LEFYF 
Sbjct: 122 PAEQKEEKGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFD 181

Query: 216 PNEYFTNTSTY*RYLMKCKPDEESPL 293
            N +F N+     Y M    DE+ P+
Sbjct: 182 TNPFFKNSVLTKTYHM---IDEDEPI 204


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 36/92 (39%), Positives = 48/92 (52%)
 Frame = +3

Query: 39  PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAP 218
           P+    KG+PDFW N  +N  +L+E + E DE  LK L+DIK    +DP  F  EF+F  
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYT 261

Query: 219 NEYFTNTSTY*RYLMKCKPDEESPLEFEGPEI 314
           N +F N      Y M  + DE    +  G EI
Sbjct: 262 NPFFKNQVLTKTYHMIDEDDEPILEKAIGTEI 293


>01_06_0465 -
           29573972-29574110,29574300-29574343,29574434-29574602,
           29574707-29574894,29575081-29575145,29575257-29575311,
           29575502-29575594,29576035-29576130,29576259-29576302,
           29576419-29576431
          Length = 301

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 34/86 (39%), Positives = 45/86 (52%)
 Frame = +3

Query: 57  KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 236
           KG+PDFW    +N  +L+E + E DE  LK L+DIK    +DP  F  EF+F  N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162

Query: 237 TSTY*RYLMKCKPDEESPLEFEGPEI 314
                 Y M  + DE    +  G EI
Sbjct: 163 QVLTKTYHMIDEDDEPILEKAIGTEI 188


>04_04_0122 -
           22918146-22918220,22918455-22918496,22918586-22918642,
           22918784-22918844,22919219-22919280,22919372-22919485,
           22919565-22919636,22919824-22919874,22919990-22920112,
           22921261-22921383
          Length = 259

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +3

Query: 54  VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 230
           +K IPDFW   F +  ML E++ E D+ I K L+ I V   ED  S +++   F+PN YF
Sbjct: 72  IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYF 131

Query: 231 TNT 239
            +T
Sbjct: 132 EDT 134


>02_04_0344 -
           22171401-22171448,22171725-22171760,22171996-22172056,
           22173246-22173304,22173384-22173497,22173575-22173646,
           22173786-22173836,22173935-22174057,22175154-22175291
          Length = 233

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +3

Query: 54  VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 230
           ++ IPDFW   F +  +LSE++ E D+ + K L+ + V   +D  S +++   F+ N YF
Sbjct: 77  IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYF 136

Query: 231 TN---TSTY 248
            +   T TY
Sbjct: 137 EDKELTKTY 145


>05_03_0077 +
           8200529-8200541,8200658-8200701,8200793-8200888,
           8201585-8201639,8201753-8201817,8202309-8202434,
           8202742-8202903
          Length = 186

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 57  KGIPDFWYNIFRNVSMLSE 113
           KG+PDFW N  +   +L+E
Sbjct: 72  KGVPDFWLNAMKKNEILAE 90


>02_01_0580 +
           4303020-4303211,4303838-4303879,4304538-4304646,
           4304731-4304859,4305002-4305121,4305223-4305343,
           4305888-4306044,4306377-4306427,4306573-4306695
          Length = 347

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 24  KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQ 155
           K + P  DP VK   D  Y IFR+   L E    H   + + LQ
Sbjct: 307 KVVYPSSDPRVKKYHDAKYQIFRS---LYEQQLSHRSAMAQALQ 347


>02_01_0607 -
           4549248-4549290,4550193-4550337,4550438-4551185,
           4551504-4551980,4552066-4552374
          Length = 573

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 157 ILKCKCMKTP*ASLWNSTLLQMNTSQIPVLTKDT**SASPMKRVH*NLKVLKFILDKGCE 336
           I++ K  K+P A ++ +T L++ T+   + T     SASP   V    + +K + D G E
Sbjct: 183 IVRDKDEKSPFARMYKNTCLKIETAAEKICTSVEASSASPCNVVPTIKEAMKMMKDCGVE 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,733,068
Number of Sequences: 37544
Number of extensions: 155712
Number of successful extensions: 351
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)