Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30902
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    91   1e-19
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    50   4e-07
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    50   4e-07
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    50   4e-07
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   1.1  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    27   2.6  
Z48543-4|CAE17720.1|  366|Caenorhabditis elegans Hypothetical pr...    26   7.9  
DQ015968-1|AAY81925.1|  366|Caenorhabditis elegans stargazin rel...    26   7.9  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 39/90 (43%), Positives = 54/90 (60%)
 Frame = +3

Query: 45  DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 224
           DP+ KGI DFW    R   +++E ++EHD PIL  L D+     +DP  F +EF+FA N 
Sbjct: 107 DPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNP 166

Query: 225 YFTNTSTY*RYLMKCKPDEESPLEFEGPEI 314
           YF N      YL+   PD E+PL+F+GP +
Sbjct: 167 YFKNQVLTKTYLLGFDPDAEAPLQFDGPHV 196


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +3

Query: 63  IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 239
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 240 STY*RYLMKCKPDEESPLEFEGPE 311
                Y ++ +       E E  E
Sbjct: 137 VITKSYHLQSESPSTEITEIEWKE 160


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +3

Query: 63  IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 239
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 240 STY*RYLMKCKPDEESPLEFEGPE 311
                Y ++ +       E E  E
Sbjct: 137 VITKSYHLQSESPSTEITEIEWKE 160


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +3

Query: 63  IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 239
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 240 STY*RYLMKCKPDEESPLEFEGPE 311
                Y ++ +       E E  E
Sbjct: 137 VITKSYHLQSESPSTEITEIEWKE 160


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 84   IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 191
            IF  V +  + +  +  P+L  L  ++V  H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
          protein Y51H7BM.1 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 87 ICCTKSLGYPLHW 49
          +CC K LGYP +W
Sbjct: 52 LCCEKELGYPSNW 64


>Z48543-4|CAE17720.1|  366|Caenorhabditis elegans Hypothetical
           protein C18D1.4 protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 166 CKCMKTP*ASLWNSTLLQMNT 228
           C C+K P ASL  S+LL +N+
Sbjct: 144 CYCLKNPYASLLISSLLHINS 164


>DQ015968-1|AAY81925.1|  366|Caenorhabditis elegans stargazin
           related protein STG-1 protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 166 CKCMKTP*ASLWNSTLLQMNT 228
           C C+K P ASL  S+LL +N+
Sbjct: 144 CYCLKNPYASLLISSLLHINS 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,816,373
Number of Sequences: 27780
Number of extensions: 149541
Number of successful extensions: 371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)