Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30902
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   7.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   9.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.4  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 151 CKILKCKCMKTP*ASLWN 204
           C+ + C C KT    LW+
Sbjct: 74  CEKVGCICRKTSFKDLWD 91


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 171 MHEDPISFTLEFYF 212
           + E  + FTL+FYF
Sbjct: 50  LSEVKMDFTLDFYF 63


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 227 LHKYQYLLKILNEVQ 271
           +HK +Y+L + N +Q
Sbjct: 373 IHKNEYMLALSNRMQ 387


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 81  NIFRNVSMLSEMMQEHDEPI 140
           ++FR  S   E +Q+ +EP+
Sbjct: 272 HLFRTASSTPEDLQDLEEPL 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,400
Number of Sequences: 438
Number of extensions: 1717
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)