Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30901
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    28   0.57 
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   4.0  
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    25   4.0  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   5.3  
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch...    24   9.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   9.3  

>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 165 TIPQVRVPFSNCPRSTEVILISVMFSLMLFVTIIDMFFFLFLAQHTFH 308
           +IP+  V  S   + + +ILIS+  SL+LFV+ ++    L  +  + H
Sbjct: 496 SIPRGYVYLSEIKQYSSLILISLWISLILFVSFLNRRLILHYSFESVH 543


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 219 ILISVMFSLMLFVTIIDMFFFLF 287
           +++ V+F  +LF+  I +F+FLF
Sbjct: 408 LILRVLFFSLLFIIGIHIFYFLF 430


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 61  WCTFRSKDRPALKLREDNA 117
           W TF + DRP LK RE  A
Sbjct: 43  WNTFANPDRPNLKKREFEA 61



 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 61  WCTFRSKDRPALKLREDNA 117
           W TF + DRP LK RE  A
Sbjct: 77  WNTFVNPDRPNLKKREFEA 95



 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 61  WCTFRSKDRPALKLREDNA 117
           W TF + DRP LK RE  A
Sbjct: 111 WNTFVNPDRPNLKKREFEA 129


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 220 ITSVERGQFEKGTRTCGIV 164
           I ++ERG+F+KG +T  I+
Sbjct: 454 IAALERGEFKKGEKTVVII 472


>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 164 YDTTSPRALFKLSTFYGSDFNISDVFINA 250
           Y+T +P + FK+   +GS  ++S V   A
Sbjct: 62  YETVTPYSRFKVDKKFGSATSVSPVHTKA 90


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 365 FVCENSISNLKKFQIYYVEMKRV 297
           F+ ENS  N K  +IY  E +R+
Sbjct: 667 FLLENSTKNGKAVKIYVTEPRRI 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,682
Number of Sequences: 5004
Number of extensions: 25170
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)