Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30901
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113...    27   5.0  
04_04_0681 - 27225526-27225802,27227163-27227524                       27   6.6  
11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363           26   8.7  
10_08_0210 - 15874289-15875663,15878248-15879263                       26   8.7  

>07_03_1732 +
           29109612-29110623,29110712-29110786,29111176-29111333,
           29111714-29111937,29112136-29112745
          Length = 692

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   RMINAHTSLNPNNEKVAPVVYVPFQGQA 89
           RM + HT+ N +N  V+PV  VP  G A
Sbjct: 251 RMTDIHTNENYSNSAVSPVNVVPPSGAA 278


>04_04_0681 - 27225526-27225802,27227163-27227524
          Length = 212

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
 Frame = +1

Query: 52  SPRWCTFRSKDRPALKLREDNAYIKTIKSISPA--------LNRLLRYHKSACPFQI 198
           +P    FR+  +P + +R   A I      SPA        L+RLLR  + AC F +
Sbjct: 42  APAASAFRATTKPDITVRAYMARIARFAGCSPACYVVAYIYLDRLLRRRRRACAFSV 98


>11_01_0636 - 5095754-5095974,5097188-5097254,5097467-5098363
          Length = 394

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 79  KDRPALKLREDNAYIKTIKSISPALNRLL 165
           K    L++ ED+ Y++ +K     LNRLL
Sbjct: 54  KSATGLRIGEDDIYLRCVKDQKEFLNRLL 82


>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 76  NGTYTTGATFSLLGFKEVWAL 14
           +G Y T    SLLG KE+W +
Sbjct: 389 HGVYFTWVILSLLGAKEIWEM 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,750,000
Number of Sequences: 37544
Number of extensions: 145996
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)