Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30901
(380 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z81579-1|CAB04655.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z68227-4|CAA92518.1| 480|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z68227-3|CAA92519.1| 507|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF016668-2|AAO12442.1| 140|Caenorhabditis elegans Hypothetical ... 28 2.6
Z92830-2|CAB07355.2| 330|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 4.5
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 4.5
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 6.0
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 6.0
Z99286-3|CAH60794.1| 320|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 26 7.9
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 26 7.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 26 7.9
>Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical
protein T26H2.8 protein.
Length = 387
Score = 29.5 bits (63), Expect = 0.85
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 177 VRVPFSNCPRSTEVILISVMFSLMLFVTIIDMFFFLF 287
+RV NC RS + + V+FSL+ F+ +I +++F
Sbjct: 25 LRVSPYNCSRSNPIRFLFVIFSLLSFLALIFRAYWMF 61
>Z81579-1|CAB04655.1| 376|Caenorhabditis elegans Hypothetical
protein R13H4.3 protein.
Length = 376
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 180 RVPFSNCPRSTEVILISVMFSLMLFVTIIDM 272
R+P S CP EV ++V FS M DM
Sbjct: 337 RIPLSRCPEPCEVSQLAVAFSNMTVTNYSDM 367
>Z68227-4|CAA92518.1| 480|Caenorhabditis elegans Hypothetical
protein F49C12.5b protein.
Length = 480
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 200 STFYGSDFNISDVFINAFCHDNRYVFFFVFSATHVSF 310
+T YGS F++ ++F + C +NR V + H++F
Sbjct: 276 ATRYGSKFSLKNMFNSMECQNNRETGKIVVNPKHLNF 312
>Z68227-3|CAA92519.1| 507|Caenorhabditis elegans Hypothetical
protein F49C12.5a protein.
Length = 507
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 200 STFYGSDFNISDVFINAFCHDNRYVFFFVFSATHVSF 310
+T YGS F++ ++F + C +NR V + H++F
Sbjct: 303 ATRYGSKFSLKNMFNSMECQNNRETGKIVVNPKHLNF 339
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 2 GADDQRPHFLEP*QRESRPGGVRSVPRTGRRLSCAKI 112
G D P+ + ESR VR P +GRR+S A++
Sbjct: 552 GVDYYAPNEIRNAYSESRHASVRQRPGSGRRISAAEL 588
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 2 GADDQRPHFLEP*QRESRPGGVRSVPRTGRRLSCAKI 112
G D P+ + ESR VR P +GRR+S A++
Sbjct: 552 GVDYYAPNEIRNAYSESRHASVRQRPGSGRRISAAEL 588
>AF016668-2|AAO12442.1| 140|Caenorhabditis elegans Hypothetical
protein F36H9.8 protein.
Length = 140
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 171 PQVRVPFSNCPRSTEVILISVMFSLMLFVTIIDMFFFLFLAQHTFHFHVINLK 329
P R F N PR ++FS+ F +I +FFF + F+F + N K
Sbjct: 33 PDARSAFRNLPRCLRTREKQILFSVRNF-SIFLLFFFKNDHRFDFNFSICNKK 84
>Z92830-2|CAB07355.2| 330|Caenorhabditis elegans Hypothetical
protein F11A5.2 protein.
Length = 330
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 NCPRSTEVILISVMFSLML--FVTIIDMFFFLFLAQHTF 305
N P S + ++S +F ++ +TI + FFL A+H++
Sbjct: 89 NVPLSFQSYMVSTLFCMVAVSIITIFENRFFLLFAEHSW 127
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 147 GRYRFNCFNVSIIFAQLKRRPVLGTERTPPGRL-SRC 40
G+Y NC + Q + PV G PPGR SRC
Sbjct: 1461 GKYGLNCTLDCECYGQARCDPVQGCCDCPPGRYGSRC 1497
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 147 GRYRFNCFNVSIIFAQLKRRPVLGTERTPPGRL-SRC 40
G+Y NC + Q + PV G PPGR SRC
Sbjct: 1461 GKYGLNCTLDCECYGQARCDPVQGCCDCPPGRYGSRC 1497
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 17 RPHFLEP*QRESRPGGVRSVPRTGRRLSCAKIMLTLKQLNRYLPH 151
RP+ L P R + VPRT R SC+ + LN+++ H
Sbjct: 933 RPYTLTPAIRPGQRIKPYKVPRTSRWYSCSWCDREYESLNQFVDH 977
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 17 RPHFLEP*QRESRPGGVRSVPRTGRRLSCAKIMLTLKQLNRYLPH 151
RP+ L P R + VPRT R SC+ + LN+++ H
Sbjct: 933 RPYTLTPAIRPGQRIKPYKVPRTSRWYSCSWCDREYESLNQFVDH 977
>Z99286-3|CAH60794.1| 320|Caenorhabditis elegans Hypothetical
protein Y7A9C.9 protein.
Length = 320
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 240 SLMLFVTIIDMFFFLFLAQHTFHFHVINL--KLF*ITYRVFTNKYV 371
+L+LF+ + + F L+L+ FHF + L + F + Y T K++
Sbjct: 91 NLILFIIVALITFALYLSTEAFHFLIFLLAAQRFLVFYFPSTEKHI 136
>Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical
protein T13H10.2 protein.
Length = 468
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 144 SRTKSIITIPQVRVPFSNCPRSTEVILISVMFSLML-----FVTIIDMFFFLF 287
S T S ++P + PF PR + FS+ L F+ +I +FF+F
Sbjct: 3 SATSSSSSMPPSQSPFEKLPRHQNIRYHEKCFSIPLHTLNYFLCVIIFYFFVF 55
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
C48B4.4c protein.
Length = 1704
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 228 SVMFSLMLFVTIIDMFFFLFLAQHTFHFHVINLKLF*ITY 347
S+++ +L+ I +F F+FLA H + H+ + LF Y
Sbjct: 1171 SLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1210
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
C48B4.4b protein.
Length = 1691
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 228 SVMFSLMLFVTIIDMFFFLFLAQHTFHFHVINLKLF*ITY 347
S+++ +L+ I +F F+FLA H + H+ + LF Y
Sbjct: 1158 SLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1197
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
C48B4.4a protein.
Length = 1689
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 228 SVMFSLMLFVTIIDMFFFLFLAQHTFHFHVINLKLF*ITY 347
S+++ +L+ I +F F+FLA H + H+ + LF Y
Sbjct: 1156 SLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1195
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 228 SVMFSLMLFVTIIDMFFFLFLAQHTFHFHVINLKLF*ITY 347
S+++ +L+ I +F F+FLA H + H+ + LF Y
Sbjct: 1171 SLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1210
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 138 DISRTKSIITIPQVRVPFSNCPRSTEV 218
D+S+T+ TIP+V V S P ST V
Sbjct: 1355 DLSKTEKESTIPRVEVTPSASPESTTV 1381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,970,573
Number of Sequences: 27780
Number of extensions: 140982
Number of successful extensions: 487
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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