Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30897
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   140   1e-34
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.3  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   9.0  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   9.0  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  140 bits (340), Expect = 1e-34
 Identities = 68/121 (56%), Positives = 87/121 (71%)
 Frame = +3

Query: 255 AIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLM 434
           A+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG M
Sbjct: 100 AVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFM 159

Query: 435 IHSGDPCNDYVNTGYQTCASQTRSTGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPQGTS 614
           IHSG P  D++++  +    +    G+KVKIMLP   + K   KK  PD ++V +P+   
Sbjct: 160 IHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEE 216

Query: 615 P 617
           P
Sbjct: 217 P 217



 Score =  132 bits (318), Expect = 5e-32
 Identities = 65/83 (78%), Positives = 70/83 (84%)
 Frame = +1

Query: 4   DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 183
           DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT++V
Sbjct: 16  DGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALV 75

Query: 184 QKRFNIPEQSVELYAEKVATRGL 252
           QKRF   E +VELYAEKV  RGL
Sbjct: 76  QKRFKFAENTVELYAEKVQNRGL 98


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 41  LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 178
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 243 SWPLAIAQAESLRYKLIGGLA---VRRACYGV 329
           +W  AI  ++   YK +GGLA   +R   +G+
Sbjct: 26  NWQYAICDSQDSNYKQVGGLACIYMRETLFGI 57


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 233 FSAYNSTDCSGMLNRFCTTEVSSR 162
           + +Y S+DC G+L+R   T+   R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 393 GQRAKSMKFVDGLMIHSGDPCNDYVN 470
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 514  SRSKSCCRGTSKARTARRSHNQTTSW*QSPKG 609
            ++ K   R   KA+  RR+  +  +W QSPKG
Sbjct: 1014 TKKKKLTRNEIKAKE-RRARERELAWLQSPKG 1044


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,564
Number of Sequences: 5004
Number of extensions: 59176
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)