Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30897
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 161 3e-40
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 30 1.3
03_02_0066 - 5361724-5362373,5362422-5362479,5363797-5364073,536... 29 2.3
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.0
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.0
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 4.0
05_02_0069 - 6324082-6324495 29 4.0
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 29 4.0
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 4.0
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 28 5.3
08_01_0923 - 9095162-9095281,9095402-9095551,9095648-9095783,909... 28 7.0
08_01_0346 - 3063440-3064189 28 7.0
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 7.0
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 9.2
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 161 bits (392), Expect = 3e-40
Identities = 77/117 (65%), Positives = 90/117 (76%)
Frame = +3
Query: 255 AIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLM 434
AIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR QRAKSMKF DG M
Sbjct: 100 AIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYM 159
Query: 435 IHSGDPCNDYVNTGYQTCASQTRSTGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPQ 605
I SG P N Y+++ + + GIKVKIML WD +GK GP P PD + + P+
Sbjct: 160 ISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPK 216
Score = 145 bits (351), Expect = 3e-35
Identities = 72/83 (86%), Positives = 75/83 (90%)
Frame = +1
Query: 4 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 183
DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRIRELTSVV
Sbjct: 16 DGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 75
Query: 184 QKRFNIPEQSVELYAEKVATRGL 252
QKRFN PE VELYAEKV RGL
Sbjct: 76 QKRFNFPENGVELYAEKVNNRGL 98
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 496 RQGVQESRSKSCCRGTSKARTARRSHNQTTSW*QSPKGRARAPR 627
R+G SRS S RG S+ R+ RS +++ S QSP+ +R R
Sbjct: 135 RRGRSYSRSPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNER 178
>03_02_0066 -
5361724-5362373,5362422-5362479,5363797-5364073,
5364264-5364409
Length = 376
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 494 SDKEYRNQGQNHVAVGPARQERPEEAT--TRPHPGNRAPRDEPVP 622
S + R +G+ +R+ER + T RPH +R+ RD+P P
Sbjct: 6 SQQASRREGRERDEHDASRRERERDHTHGRRPHSSSRSRRDDPSP 50
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 417 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 313
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 38 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 142
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 497 LRSTCLVASVDVIIAR-VSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTI 321
L C+ S D ++ V R D +++Y+ G ++ +NN +++G HD N I
Sbjct: 741 LNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGNVI 800
Query: 320 ASTTYSETSDKLVS 279
++ +S
Sbjct: 801 GQGDQDSEKNRYLS 814
>05_02_0069 - 6324082-6324495
Length = 137
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 269 GLGDSQRPRVATFSAYNSTDCSGMLNRFCTTEVSS 165
GLG SQ A A +S+ C G L R C+ V +
Sbjct: 37 GLGYSQLLTTAHLGAISSSSCGGRLGRQCSAAVGA 71
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -2
Query: 615 GSSLGALLPGCGLVVASSGRSCLAGPTA 532
G S G GC +V SG S LAGPTA
Sbjct: 267 GHSTGFCAKGCAAIV-DSGTSLLAGPTA 293
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 102 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 1
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 615 GSSLGALLPGCGLVVASSGRSCLAGPTA 532
G + G GC +A SG S LAGPTA
Sbjct: 275 GKTTGFCASGCS-AIADSGTSLLAGPTA 301
>08_01_0923 -
9095162-9095281,9095402-9095551,9095648-9095783,
9095916-9095995,9096112-9096269,9096358-9096612,
9096804-9097205,9097287-9097408,9097623-9097741,
9098506-9098597,9098763-9098934
Length = 601
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 377 IWQAAWSTCQINEVCRWTHDPLWRPLQ*LRQHWLPDMCFSDKEYRNQGQN 526
+ + +ST NEV R + +WR L ++ WLP + D E G N
Sbjct: 225 VTEECYSTTSSNEVSRRGQNGIWRRLSDMKL-WLPFLRSIDDENVKGGDN 273
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 267 AESLRYKLIGGLAVRRACYGVLR 335
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 598 SVTRMWSGCGFFGPFLPCWSH 536
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 447 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 352
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,475
Number of Sequences: 37544
Number of extensions: 444799
Number of successful extensions: 1474
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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