Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30897
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   176   9e-45
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    31   0.51 
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    30   1.6  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z66515-12|CAC42333.1|  860|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z66515-11|CAA91354.1|  858|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z48178-11|CAC42247.1|  860|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z48178-10|CAA88206.1|  858|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    28   6.3  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    28   6.3  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  176 bits (429), Expect = 9e-45
 Identities = 81/117 (69%), Positives = 95/117 (81%)
 Frame = +3

Query: 255 AIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLM 434
           A+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLM
Sbjct: 100 AVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLM 159

Query: 435 IHSGDPCNDYVNTGYQTCASQTRSTGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPQ 605
           IHSG P NDY+    +    +    GIKVKIMLP+D +G+NGP+   PDH+ + EPQ
Sbjct: 160 IHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQ 216



 Score =  135 bits (326), Expect = 3e-32
 Identities = 65/82 (79%), Positives = 73/82 (89%)
 Frame = +1

Query: 7   GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 186
           G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRRI+ELTSVVQ
Sbjct: 17  GIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQ 76

Query: 187 KRFNIPEQSVELYAEKVATRGL 252
           KRF   E SVELYAEKV+ RGL
Sbjct: 77  KRFGFEEGSVELYAEKVSNRGL 98


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 127 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLWLSPRP 270
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R     P P
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGRSQAPGPAP 443


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 512 NQGQNHVAVGPARQERPEEATTRPHPGNRAPRDEPVP 622
           NQG +   V   +QE P + T +PHP  + P+ + +P
Sbjct: 341 NQGHHSFQV-MVKQEPPSQFTPQPHPMQQTPQQQVLP 376


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRWL 241
           G R C+  KD ++ +S      D+ FQ +  NC+ K W+
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 184


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRWL 241
           G R C+  KD ++ +S      D+ FQ +  NC+ K W+
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 186


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 522  KIMLPWDQQ-GKNGPKKPQPDHILVTEPQGTSPCPS 626
            K+M  WD +  ++ P+ P+PD   V EP G S  P+
Sbjct: 1453 KLMGSWDNKCEEDKPEPPKPDPSKVEEPTGKSSLPA 1488


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 49  LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 210
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 49  LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 210
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>Z66515-12|CAC42333.1|  860|Caenorhabditis elegans Hypothetical
           protein C05C10.6b protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 348 SGARGCEVVV-SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTGYQTCASQTRSTGIKVK 524
           SG  G +    SG+   Q + S  F  G    SGDP     + GY+  A +   +     
Sbjct: 519 SGGHGADPFTGSGRYVPQASNSSGFDTGF---SGDPLTG--DGGYRASAPENTGSHAVPL 573

Query: 525 IMLPWDQQGKNGPKKPQPDHILV 593
             LP +++   GP  P PD  ++
Sbjct: 574 SSLPQNKKKPRGPLVPVPDFYII 596


>Z66515-11|CAA91354.1|  858|Caenorhabditis elegans Hypothetical
           protein C05C10.6a protein.
          Length = 858

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 348 SGARGCEVVV-SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTGYQTCASQTRSTGIKVK 524
           SG  G +    SG+   Q + S  F  G    SGDP     + GY+  A +   +     
Sbjct: 517 SGGHGADPFTGSGRYVPQASNSSGFDTGF---SGDPLTG--DGGYRASAPENTGSHAVPL 571

Query: 525 IMLPWDQQGKNGPKKPQPDHILV 593
             LP +++   GP  P PD  ++
Sbjct: 572 SSLPQNKKKPRGPLVPVPDFYII 594


>Z48178-11|CAC42247.1|  860|Caenorhabditis elegans Hypothetical
           protein C05C10.6b protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 348 SGARGCEVVV-SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTGYQTCASQTRSTGIKVK 524
           SG  G +    SG+   Q + S  F  G    SGDP     + GY+  A +   +     
Sbjct: 519 SGGHGADPFTGSGRYVPQASNSSGFDTGF---SGDPLTG--DGGYRASAPENTGSHAVPL 573

Query: 525 IMLPWDQQGKNGPKKPQPDHILV 593
             LP +++   GP  P PD  ++
Sbjct: 574 SSLPQNKKKPRGPLVPVPDFYII 596


>Z48178-10|CAA88206.1|  858|Caenorhabditis elegans Hypothetical
           protein C05C10.6a protein.
          Length = 858

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 348 SGARGCEVVV-SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTGYQTCASQTRSTGIKVK 524
           SG  G +    SG+   Q + S  F  G    SGDP     + GY+  A +   +     
Sbjct: 517 SGGHGADPFTGSGRYVPQASNSSGFDTGF---SGDPLTG--DGGYRASAPENTGSHAVPL 571

Query: 525 IMLPWDQQGKNGPKKPQPDHILV 593
             LP +++   GP  P PD  ++
Sbjct: 572 SSLPQNKKKPRGPLVPVPDFYII 594


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 502 GVQESRSKSCCRGTSKARTARRSHNQTTSW*QSPKGRARAP 624
           G   SRS S  R  S++R  RRS ++++S     K R+R+P
Sbjct: 204 GRSRSRSNSRSRSRSRSRDRRRSRSRSSS---RSKSRSRSP 241


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 387 LRGQRAKSMKFVDGLMIHSGDPCNDYVNTG 476
           LRG R K+  FV+G+++++G       N G
Sbjct: 272 LRGSRIKNTTFVEGIVVYAGHDTKVMQNNG 301


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 387 LRGQRAKSMKFVDGLMIHSGDPCNDYVNTG 476
           LRG R K+  FV+G+++++G       N G
Sbjct: 272 LRGSRIKNTTFVEGIVVYAGHDTKVMQNNG 301


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 263 GDSQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPSTLCVLVA 117
           G S  P   T  AY  T  SG++   C+ + +    RP      C ++A
Sbjct: 112 GFSNTPTSTTTCAYIKTSSSGLVFDSCSIDANVLCDRPLQKQDYCSIIA 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,254
Number of Sequences: 27780
Number of extensions: 353140
Number of successful extensions: 1160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)