Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30889
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   114   4e-27
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   114   4e-27
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    45   3e-06
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   2.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   2.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   2.0  
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.1  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    24   6.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   8.0  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  114 bits (274), Expect = 4e-27
 Identities = 49/58 (84%), Positives = 56/58 (96%)
 Frame = +3

Query: 3   KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 176
           KK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 73  KKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  114 bits (274), Expect = 4e-27
 Identities = 49/58 (84%), Positives = 56/58 (96%)
 Frame = +3

Query: 3   KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 176
           KK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 73  KKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 45.2 bits (102), Expect = 3e-06
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +3

Query: 18  AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 155
           A+++R + P RR DG ++ F+DNA V+VN + E  G+ I   VA E
Sbjct: 64  AIIVRTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANE 109


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 127 EPFISPLLLTMTPALSSKYINTPS 56
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 169  HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 17
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 175 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 38
           R H+ AH+       AEP ++P++   + P+++    +TPS L   F
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 15  PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 134
           P+  I  +KP    D V +  +D+   + N+K ++   A+
Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 57  DGVFIYFEDNAGVIVNNKGEMKGSAI 134
           DG  +  E N  ++VN   +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 231 RFTFLS*YSKSNPKNYNLRNRHLQCKCAKLEYTFM 335
           +F+ L    K N  +  L N   Q KC K +Y+F+
Sbjct: 480 KFSLLKYPKKENVISLELLNFFSQFKCNKKDYSFV 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,124
Number of Sequences: 5004
Number of extensions: 23850
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)