Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30889
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 115 1e-26
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 115 1e-26
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 115 1e-26
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 48 3e-06
03_05_0291 - 22837412-22838128 29 0.81
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 1.9
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 27 4.3
03_05_0615 + 26137785-26138593,26139307-26141368 27 5.7
02_02_0500 - 10993675-10994067,10994434-10995738 27 5.7
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 115 bits (277), Expect = 1e-26
Identities = 49/58 (84%), Positives = 56/58 (96%)
Frame = +3
Query: 3 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 176
KKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 74 KKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 115 bits (277), Expect = 1e-26
Identities = 49/58 (84%), Positives = 56/58 (96%)
Frame = +3
Query: 3 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 176
KKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 74 KKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 115 bits (277), Expect = 1e-26
Identities = 49/58 (84%), Positives = 56/58 (96%)
Frame = +3
Query: 3 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 176
KKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 91 KKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 47.6 bits (108), Expect = 3e-06
Identities = 24/49 (48%), Positives = 31/49 (63%)
Frame = +3
Query: 9 VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 155
V+ VV+R R DG I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 105 VVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 0.81
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 190 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 77
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 78 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 164
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 39 KPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKEC-ADLWP 173
KP D V + DN GV+V+ G GS+ +C A+++P
Sbjct: 214 KPLSGGDEVMLLV-DNVGVVVDRSGHPVGSSFVFNTTPDCIAEVYP 258
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 211 TFKISNCVSLSFPSTQSQTRKIIICVID 294
T + NC L+ PST S RK++ ++D
Sbjct: 619 TLDLRNCRRLTLPSTISGLRKLVRLLVD 646
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 139 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAG 14
P EP I+ + ++PA+ +T S + NG+ +M+T G
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEG 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,462,467
Number of Sequences: 37544
Number of extensions: 146246
Number of successful extensions: 349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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