Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30889
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   115   1e-26
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical pr...    26   6.7  
AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L prot...    26   6.7  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    26   8.9  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  115 bits (276), Expect = 1e-26
 Identities = 52/58 (89%), Positives = 54/58 (93%)
 Frame = +3

Query: 3   KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 176
           KKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74  KKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 233 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 102
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 101 DYDTRIVLKVYKYSITPSERFPL 33
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical
           protein C52E4.6a protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 91  PALSSKYINTPSRLLNGFRCLMTTAG 14
           PA+   YINT   ++N  R ++ T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228


>AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L
           protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 91  PALSSKYINTPSRLLNGFRCLMTTAG 14
           PA+   YINT   ++N  R ++ T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 97  MTPALSSKYINTPSRLLNGFRCLMTT 20
           +TP ++ KY + PS + NG  C  T+
Sbjct: 391 LTPEINGKYCDLPSSVSNGTVCNSTS 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,389,512
Number of Sequences: 27780
Number of extensions: 130424
Number of successful extensions: 299
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)