Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30881
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.15 
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    30   0.20 
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    29   0.45 
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   2.4  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   3.2  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    25   7.3  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   7.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.7  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   9.7  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 236 LENCHYLCNSKSCFSTIIHVDSKDHLFRIQCVLFYY*INPDELDSVKS*NYS 81
           LE  ++LC      S +  V  K+ +FRI  V FY  +N    D ++  NYS
Sbjct: 68  LEGSNFLCVISGA-SEVARVRDKERVFRIMEVCFYS-VNRSNWDHIRQENYS 117


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +1

Query: 256 LDLSNNNISRLYSNSFASLKSLVNFEIGNNPLVGALEERSFDGLSSLPTLDISGTLLTVI 435
           LDLS NNI  +   +   LK L N     N  +  +E  + +GL  L  L++ G  + VI
Sbjct: 109 LDLSFNNIKTI--RNINHLKGLENLFFVQNR-IRRIE--NLEGLDRLTNLELGGNKIRVI 163

Query: 436 QN-NSFEGMIKL---KNVNMSHSNIERLHTTLSLTLE 534
           +N ++   + KL   KN      N E+L     L+++
Sbjct: 164 ENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQ 200



 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 77  SVNSFKTLRNLAHLDLSNNKIKHIEF 154
           S +  + L NL  LD+SNN IKH+ +
Sbjct: 229 SFSGIEVLENLEILDVSNNMIKHLSY 254


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = +1

Query: 229 FSRLEFTFVLDLSNNNISRLYSNSFASLKSLVNFEI--GNNPLVGALEERSFDG---LSS 393
           F+   F   L  +N NI  LY N   +  +++NFEI  G +  + +L   +F     +S+
Sbjct: 4   FNDYIFYEYLKKTNWNIHNLYCNLTQTADNILNFEIPSGVSCQLSSLTSSNFASGCKISA 63

Query: 394 LPTLDISGTLLTVIQNNSFEGMIKLKNVNMSH 489
           +P L  +G++  V  N + E + +    N+ H
Sbjct: 64  MPIL--NGSMSYVYTNVNLENLNRNITYNLQH 93


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 235 RLEFTFVLDLSNNNISRLYSNSFASLKSLVNFEIGNNPL 351
           RLE   +LD+S N I +L   SF +L +L    I  N L
Sbjct: 96  RLESLEILDISRNKIKQL-PESFGALMNLKVLSISKNRL 133


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +1

Query: 259 DLSNNNISRLYSNSFASLKSLVNFEIGNNPLV-GALEERSFDGLSSLPTLDIS-GTLLTV 432
           + SN+++  + S+     +S+V+ EIG  P+V G L   S D  +++   D+S G LLT 
Sbjct: 158 ETSNSSVKAI-SHFSGHKRSIVSMEIGPGPIVSGRLYTASED--NTIRIWDVSTGNLLTT 214

Query: 433 I 435
           I
Sbjct: 215 I 215


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 111 ARFRKVLKLFTDKFSISLSFNNNIIA 34
           ARF + L+   D+F I++   N ++A
Sbjct: 268 ARFMRTLQRLADEFGIAVVITNQVVA 293


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 507 QSFDVTMRHIDIFQFY---HSFKRIILNNS 427
           Q FDV   HIDI Q     +S + ++LNNS
Sbjct: 184 QIFDVVSEHIDITQTSDAPNSNRNLLLNNS 213


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 376 FDGLSSLPTLDISGTLLTVIQNNSFEGMIKLKNVNMSHSNI 498
           F  L ++ TLD+    +    NN  EG+ +L  + +SH ++
Sbjct: 337 FSLLQTVLTLDVE--TVRAFSNNILEGLAELHRLGISHKSL 375


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 332  SKFTNDFNDANEFE*SREMLLFDKSKTKVNSSLENCHY 219
            +KFT  +ND+N +E   + +LF +   +V S++E   Y
Sbjct: 1088 AKFT--YNDSNAYEKVFKPMLFHECWAQVKSAVEEKQY 1123


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 286 LYSNSFASLKSLVNFEIGNNPLVGA 360
           L+SN F S+  ++ F +   P+VGA
Sbjct: 651 LWSNMFFSISGMIVFNMMGIPMVGA 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,732
Number of Sequences: 5004
Number of extensions: 39773
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)