Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30881
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    50   2e-08
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.88 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.88 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   1.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   1.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   1.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
 Frame = +1

Query: 229 FSRLEFTFVLDLSNNNISRLYSNSFASLKSLVNFEIGNNPL--VGALEERSFDGLSSLPT 402
           F  L F  +LDL NN+I R+ SN+F  L +L   E+ +N L  VGA   + F+GL  L  
Sbjct: 355 FKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGA---QLFNGLFVLNR 411

Query: 403 LDISGTLLTVIQNNSFEGMIKLKNVNMSHSNI 498
           L +SG  +  I   +F     LK +++S + +
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKELDLSGNEL 443



 Score = 37.5 bits (83), Expect = 9e-05
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
 Frame = +1

Query: 229 FSRLEFTFVLDLSNNNIS--RLYSNSFASLKSLVNFEIGNNPLVGALEERSFDGLSSLPT 402
           F+RLE   VL+L+ N +   R+   +F  L  L+   +  N L   ++ R F  L  L  
Sbjct: 305 FTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTH-IDARMFKDLFFLQI 363

Query: 403 LDISGTLLTVIQNNSFEGMIKLKNVNMSHSNIERLHTTL 519
           LD+    +  I++N+F  +  L  + +S + +  +   L
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQL 402



 Score = 28.3 bits (60), Expect = 0.054
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 361 LEERSFDGLSSLPTLDISGTLLTVIQNNSFEGMIKLKNVNMSHSNIERL 507
           L+   F G  ++  L ++G+ +  IQN +F G+  L+ +++  + I  L
Sbjct: 809 LQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIREL 857



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 83  NSFKTLRNLAHLDLSNNKIKHI 148
           N+F  L NL  L+LS+NK++ +
Sbjct: 377 NAFLPLYNLHTLELSDNKLRTV 398



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 98  LRNLAHLDLSNNKIKHIE 151
           L NL  L+L+ NK++H+E
Sbjct: 501 LPNLQILNLARNKVQHVE 518



 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 89  FKTLRNLAHLDLSNNKIKHIE 151
           FK L  L  LDL NN I  IE
Sbjct: 355 FKDLFFLQILDLRNNSIDRIE 375


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 18/82 (21%), Positives = 34/82 (41%)
 Frame = +1

Query: 268 NNNISRLYSNSFASLKSLVNFEIGNNPLVGALEERSFDGLSSLPTLDISGTLLTVIQNNS 447
           NN   ++ +N F S+  +  + +G  PL     E   D   + P   +    ++ ++N S
Sbjct: 135 NNGAVKVLANEFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNPV--LFISSLENIS 192

Query: 448 FEGMIKLKNVNMSHSNIERLHT 513
             G+      +  H    RL+T
Sbjct: 193 LNGIDPELTESEQHRLQNRLYT 214


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 18/82 (21%), Positives = 34/82 (41%)
 Frame = +1

Query: 268 NNNISRLYSNSFASLKSLVNFEIGNNPLVGALEERSFDGLSSLPTLDISGTLLTVIQNNS 447
           NN   ++ +N F S+  +  + +G  PL     E   D   + P   +    ++ ++N S
Sbjct: 173 NNGAVKVLANEFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNPV--LFISSLENIS 230

Query: 448 FEGMIKLKNVNMSHSNIERLHT 513
             G+      +  H    RL+T
Sbjct: 231 LNGIDPELTESEQHRLQNRLYT 252


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 265 SNNNISRLYSNSFASLKSLVNF 330
           +NNN  +LY N++  L   +N+
Sbjct: 92  NNNNYKKLYCNNYKKLYYNINY 113


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 265 SNNNISRLYSNSFASLKSLVNF 330
           +NNN  +LY N++  L   +N+
Sbjct: 92  NNNNYKKLYCNNYKKLYYNINY 113


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 265 SNNNISRLYSNSFASLKSLVNF 330
           +NNN  +LY N++  L   +N+
Sbjct: 92  NNNNYKKLYCNNYRKLYYNINY 113


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 468 QFYHSFKRIILNNSQ*GPGYIKRWQRAESVE 376
           Q  H+ +  I+ NSQ  PG    W     ++
Sbjct: 567 QNLHAGENTIIRNSQQAPGQSPDWPSTSQIQ 597


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 258 RFIEQQHFSALLEFVCVI 311
           R  EQQHF  L   VC +
Sbjct: 389 RHKEQQHFQPLNSAVCAL 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,951
Number of Sequences: 438
Number of extensions: 2658
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)