Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30880
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   3.1  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   4.2  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   5.5  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   7.3  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   7.3  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   7.3  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   7.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   9.6  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 338 KSKIKREKEKGIIHYSLVYATVAPAYVSSNGFIPRTFFHGFFL 466
           K + K+ K+K      L Y T    Y  SNG IP      F++
Sbjct: 90  KVEEKKSKKKAKDEKPLTYTTGGYLYCRSNGLIPHVMKRYFYM 132


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 508 NPYPLQVCRKELRSKNSLYSHNS 576
           NP    VC K  RS+N L +H +
Sbjct: 268 NPIMCMVCNKNFRSQNQLENHEN 290


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 380 YSLVYATVAPAYVSSNGFIPRTFFHGFFLTVLLSHFXQFG 499
           +S + + +A  YV S   +PR FF  F    L++   +FG
Sbjct: 140 FSTLMSILALVYVPSWINLPRLFFRTFRYVFLITSIIEFG 179


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 239 NLQKKIVLNFM*VFLIFLLNFAD*--FLFKCRKVCKSKIKREKEKGIIHYSLVYATVAP 409
           N  +K+VLN +   L+ +   +D    LFKC ++ K +   EK+ G+   SL+     P
Sbjct: 299 NYIQKVVLNIL-FLLLSIDTHSDVVELLFKCAQIVKGRPDIEKDFGVPLLSLLKQQSVP 356


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 140 LILITNLEINKKKML-CRGTPGRNEVLRLM*N 232
           L+ +  L+++K K L C G   RNE+L+ M N
Sbjct: 306 LLALKRLDLSKVKYLVCSGGVARNELLKKMLN 337


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 28  YADYVWITYDTL*TFIYLFKIDEWI 102
           YA   ++ YD    F +  KIDEW+
Sbjct: 201 YAGMSFLAYDLATDFFHKQKIDEWV 225


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 459 NPWKKVRGIKPLEETY 412
           NPWK V+ +K L+ TY
Sbjct: 14  NPWKVVQALKELDLTY 29


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   LSHMLRIEDMLITYGLRMIRYELLFIYLK 88
           L   LR+ D++  YGL M    L+ I+LK
Sbjct: 349 LPEALRLMDLIAIYGLEMFVRLLVAIFLK 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,601
Number of Sequences: 5004
Number of extensions: 37774
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)