Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30877
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   101   8e-23
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   100   1e-22
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.2  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.8  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   4.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.4  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.4  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.4  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   8.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.4  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  101 bits (241), Expect = 8e-23
 Identities = 50/81 (61%), Positives = 59/81 (72%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKX 434
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   K 
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 435 ELIIEGXSLEXVSSSAXLIQQ 497
           E+IIEG SLE VS SA  I+Q
Sbjct: 141 EIIIEGNSLENVSQSAANIKQ 161



 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 32/78 (41%), Positives = 52/78 (66%)
 Frame = +1

Query: 19  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 198
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 199 KKELAAVRTVCSHVENMI 252
           +K  A +RT  S + NMI
Sbjct: 62  RKHNACIRTAYSIINNMI 79


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  100 bits (239), Expect = 1e-22
 Identities = 49/81 (60%), Positives = 59/81 (72%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKX 434
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   K 
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 435 ELIIEGXSLEXVSSSAXLIQQ 497
           E+I+EG SLE VS SA  I+Q
Sbjct: 141 EIILEGNSLENVSQSAANIKQ 161



 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 31/78 (39%), Positives = 50/78 (64%)
 Frame = +1

Query: 19  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 198
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 199 KKELAAVRTVCSHVENMI 252
           +K  A +R+V S + NMI
Sbjct: 62  RKHNACIRSVYSIINNMI 79


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 46   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 213
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 214  AVRTVCSHVENMI 252
             + T+CS + N++
Sbjct: 1623 VLATICSCLGNLL 1635


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 414 NSPKQKXELIIEGXSLEXVSSSAXLIQQS 500
           +SPK+K +L ++G  L+ +  +  LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 212 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 102
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 419 RVNDGHTRCHLYPSDVFLPQEVT 351
           ++N+ ++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 222 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGP 100
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 228 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGPFNCHQT 82
           D P+G     GS  F+      V+H+N N+    +  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 72  MDRKPVWDFDFLICYNLLHVWALF 1
           M+R P+  FDF+   N +H   LF
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF 317


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 223 TVCSHVENMIKE*LKASNTRCVL 291
           T CS+VEN IKE  +     C+L
Sbjct: 437 TFCSNVENDIKEIFEVCKDYCML 459


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 281 LVLEAFSYSLI--MFSTCEQTVLTAASSFL 198
           L L +FSYS+I  +F  CE T     +SFL
Sbjct: 891 LYLVSFSYSIISNLFLGCETTERAQLASFL 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,465
Number of Sequences: 5004
Number of extensions: 41894
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)