Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30877
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    99   9e-22
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    27   7.6  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =   99 bits (238), Expect = 9e-22
 Identities = 46/82 (56%), Positives = 58/82 (70%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKX 434
           GVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QK 
Sbjct: 81  GVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKD 140

Query: 435 ELIIEGXSLEXVSSSAXLIQQS 500
           E+++EG  ++ VS +A  IQQS
Sbjct: 141 EIVVEGNDVQFVSQAAARIQQS 162



 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 41/80 (51%), Positives = 60/80 (75%)
 Frame = +1

Query: 16  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 195
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 196 SKKELAAVRTVCSHVENMIK 255
            +KELAA+RTVCSH++NMIK
Sbjct: 61  VRKELAAIRTVCSHIKNMIK 80


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 258  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 395
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 144 NSQVFKVPFENSAGPFNCHQTRFHMDR 64
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 144 NSQVFKVPFENSAGPFNCHQTRFHMDR 64
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 251 IMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 129
           +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 280 LLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 191 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 72
           NH   ++R+     M T K  +    TP G L +T  + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,527,576
Number of Sequences: 27780
Number of extensions: 241923
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)