Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30876
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   3.4  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.8  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   7.8  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 172 LIFQRCYNF*LVVNM*LGLRTTTVLNHIINST 77
           LI  R Y    ++N+ LG+RT T ++ + N T
Sbjct: 363 LISYRAYWAEQIINLVLGMRTETTIDELANKT 394


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 8   EKEKTEDLKKTIRRKSLKGY--EGSSAVDDVIQNGSGSQTELHINDQLEVVTSLED 169
           + E  E++      K L G   E  S VDDV  +G  S  +  IN ++     LED
Sbjct: 222 DSESEEEVDGHSEGKELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLED 277


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 588  LRLLCSYCAYSNEQHTSQSVVKVQR 662
            + +L   CAYSNEQ T Q+V +++R
Sbjct: 1667 ISILVFLCAYSNEQQT-QAVDEIRR 1690


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 179 KYFNLPTMLQLLVGR*YVARS---ANHYRSESHHQQHWNLHIL*GICG 45
           KY   PT+ Q  +     A+S   ++   S+  H QHW   +L G+ G
Sbjct: 140 KYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQHWYDRVLEGLVG 187


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 258 LQDFHNLVISVRKYVSYTDSEL 323
           LQ  H+ + SVR+ V+YTD E+
Sbjct: 501 LQYAHSRLSSVRRNVNYTDEEI 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,312
Number of Sequences: 5004
Number of extensions: 51781
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)