Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30874
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   106   3e-24
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.9  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   3.4  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   5.9  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   5.9  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  106 bits (254), Expect = 3e-24
 Identities = 50/94 (53%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
 Frame = +3

Query: 216 PWSSKVHEFXTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
           P+  K+  F   GP   M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ H
Sbjct: 58  PFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCH 117

Query: 387 GSDSVESAKKXIGLWFTDKEVVGWTPANENWVYE 488
           GSDS+ESA + I LWF   E+  +    E W+YE
Sbjct: 118 GSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151



 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
 Frame = +1

Query: 46  ERTFIMVKPDGVQRGLVGTIIERXXXXXXXXXXXXXXWPSEELLQQHYSDLASRPFFPGL 225
           E+TFI VKPD VQRGL+G II +               PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 226 VKYMSSXPV--VLWYGR 270
           V +M+S PV  ++W G+
Sbjct: 64  VGFMASGPVCAMIWEGK 80


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 393 DSVESAKKXIGLWFTDKEVVGWTPANENWVYEYIYFNL*F 512
           D +ES +  + L   D E   + P+NE+  + YI+  + F
Sbjct: 366 DKLESYESQLSLILVDIEAKFYDPSNEDIQFRYIFLKMVF 405


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 177 EKFF*WPYE--FQTD*FEAFLXETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 4
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 131 KPFXSKRSIMVPTRPRCTPSGLT 63
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 449 NFFVRKPEAYXLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 273
           N FV  P       R +  RT+   TP+L  E  ++    R+S V C   H  +S  N  
Sbjct: 5   NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62

Query: 272 ALPYHRT 252
           ++   RT
Sbjct: 63  SVRNTRT 69


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +3

Query: 270 GLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 386
           GL +++ G ++   T+P+      GT+ GD C+++G   NI+H
Sbjct: 364 GLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,404
Number of Sequences: 5004
Number of extensions: 43725
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)