Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30874
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   109   1e-24
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    39   0.002
L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    27   9.4  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  109 bits (262), Expect = 1e-24
 Identities = 52/95 (54%), Positives = 66/95 (69%), Gaps = 4/95 (4%)
 Frame = +3

Query: 216 PWSSKVHEFXTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
           P+   + E+ + GP   MVW+GL+VVK GR MLGATNP  S PGTIRGD CIQ GRNI H
Sbjct: 59  PFFPSLIEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICH 118

Query: 387 GSDSVESAKKXIGLWFTDKEVVGW-TPANENWVYE 488
           GSD+V+SA + I  WF  +E+  + +P   +WVYE
Sbjct: 119 GSDAVDSANREIAHWFKQEEINDYASPFINSWVYE 153



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 38/76 (50%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +1

Query: 46  ERTFIMVKPDGVQRGLVGTIIERXXXXXXXXXXXXXXWPSEELLQQHYSDLASRPFFPGL 225
           ERTFI +KPDGV RGLVG II R                S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 226 VKYMSSXPVV--LWYG 267
           ++YMSS PVV  +W G
Sbjct: 65  IEYMSSGPVVAMVWQG 80


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = +3

Query: 216 PWSSKVHEFXTCGP---MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIH 386
           P+   + ++ + GP   M+WEG +VVK  R +LG       +  +I  DL ++      H
Sbjct: 34  PFFPLLIDYMSSGPVVAMLWEGCDVVKRARVILGEELEV-GEFRSIFYDLVVRDTHKGCH 92

Query: 387 GSDSVESAKKXIGLWFTD 440
            SDSV SA +   LWF +
Sbjct: 93  CSDSVASANREYVLWFEE 110



 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 205 RPFFPGLVKYMSSXPVV--LWYG 267
           +PFFP L+ YMSS PVV  LW G
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEG 55


>L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical
           protein K02D10.4 protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 93  CGHHY*TFRXERLQTSRFEIRMAIRRTSP 179
           CGH        R +T +FE R+ ++R+SP
Sbjct: 107 CGHPVEVDDHHRRETKKFENRLTLKRSSP 135


>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 545 RMFXINYENKTKLQIKINVLINPVFICRCPAHNFFVRK 432
           + F    E +TKLQ KI  L+N  F C     +F  +K
Sbjct: 275 KWFANTMEEETKLQNKITNLVNETFNCITTVISFAAQK 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,463
Number of Sequences: 27780
Number of extensions: 256413
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)