Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30870
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    34   0.006
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   2.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   4.8  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    24   4.8  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    24   6.4  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    24   6.4  

>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 33.9 bits (74), Expect = 0.006
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 22  VCYAIGXSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKIXTV 195
           +C  +G    PY+      PT  KL A C  H Y GV   A+ +L+R     YK+  V
Sbjct: 666 ICMYVGAPFTPYLE-----PTVEKLVA-CTTHFYEGVRKSALSSLWRCATTYYKVCNV 717


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 154 DSALQT*RRL--YKCVLCRTRTA*H*SGTSPRL*HTARLIXRWRSTRC 17
           D  LQT  RL  +  V  R RT  H  GT   L    RL+ RW    C
Sbjct: 734 DELLQTDARLRLFHTVSSRLRT--HHLGTDVPLSRYCRLVRRWDEESC 779


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 56   MLQSGRCSRLMSSCTRPA*HTFIQASLCLQ--CRISSGLSNKRIKXTQC 196
            +L + RCS+ ++    PA   F    LC Q  C   +G+    +   QC
Sbjct: 1823 LLLARRCSKCLTEPMEPAICLFCGKLLCFQSHCCSFNGIGECNLHMQQC 1871


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +1

Query: 13  VYIVCYAIGXSTVPYVTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQA--YKI 186
           +++  Y      + +V +GE FP   +   + +A     +  F +      +  A  +K+
Sbjct: 374 LFLFSYCCSWGPMGWVIVGETFPIRYRSKCASVATSGNWLGNFMISFFTPFINNAIGFKL 433

Query: 187 XTVFXGFTIFSFLGLVFM 240
             ++    +FS   + F+
Sbjct: 434 GYIYACINLFSSFMIFFL 451


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 85  NVKLYASCIAHIY 123
           NV++YA  +AHIY
Sbjct: 358 NVRVYADALAHIY 370


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +1

Query: 91  KLYASCIAHIYTGVAMFAVQNLFRVVEQAYKIXTVFXGFTIFSFLGLVFMVMXLPKQKES 270
           + Y +  +H+      F V+N+  VVE+  K      G T+   +    ++  +   K  
Sbjct: 227 EFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRK 286

Query: 271 PSPQ 282
           P+ Q
Sbjct: 287 PNNQ 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,244,280
Number of Sequences: 5004
Number of extensions: 21492
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)