Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30870
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.29 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   1.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   2.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   4.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   4.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   4.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.3  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.29
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 58  VTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKIXTVFXGFTI 213
           + +G +FP + K  ASC  ++Y          LF  V+Q  +   +  G TI
Sbjct: 57  IVLGGLFPVHEKGGASCGPNVYNRGVQRLEAMLF-AVDQINRDEDILPGITI 107


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 2   WPLSFTSCATPSAYQPCRMLQSGRCSR 82
           W +S  +C+ P    P    +SGR  R
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGRRRR 411


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 96  QLDISREHLPDCNIRH 49
           QLDIS  +  DC I +
Sbjct: 180 QLDISNNYTTDCTIEY 195


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 251 SXITMKTSPRNEKIVNPXNTVXILYA 174
           S +   TSP   K VNP   +  L+A
Sbjct: 10  SKVDRSTSPLPRKPVNPVQELKALFA 35


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 162 PEEILHCKHSDAC 124
           P E+   KH+DAC
Sbjct: 46  PNELGRFKHTDAC 58


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 162 PEEILHCKHSDAC 124
           P E+   KH+DAC
Sbjct: 51  PNELGRFKHTDAC 63


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 162 PEEILHCKHSDAC 124
           P E+   KH+DAC
Sbjct: 51  PNELGRFKHTDAC 63


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 83  LMSSCTRPA 109
           L+SSCTRP+
Sbjct: 12  LLSSCTRPS 20


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 83  LMSSCTRPA 109
           L+SSCTRP+
Sbjct: 12  LLSSCTRPS 20


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 107 QDAYSLTLVGNISPIVTYGT 48
           +   SLT  GN+S + T  T
Sbjct: 712 ESTQSLTTTGNVSYLTTNNT 731


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,713
Number of Sequences: 438
Number of extensions: 1457
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)