Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30868
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0269 + 16265191-16265472,16265574-16266149                       31   0.31 
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    29   0.94 
08_01_0054 - 367770-370166                                             29   1.2  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   2.2  
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    27   3.8  
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    27   6.6  

>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 152 LPLFPLS*NRAWEPL---MESTDPQCHILQHRRPRLPL 48
           LP  P      W PL   M  T P C +L++ RPRLPL
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 172 TSILRKFSGRQHCVTVDCCCHGSPHAMSDAKHHP 273
           T  L +  G   C  + C C   PH +  ++HHP
Sbjct: 24  TPSLGRVIGGSKCKCLMCVCDVDPHPLPPSRHHP 57


>08_01_0054 - 367770-370166
          Length = 798

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +1

Query: 121 ARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHGSPHAMSDAKHHPFSTSLQD 294
           +R  LS   G K SR     L K  GRQ         H + HA  +  H P ++S+ D
Sbjct: 2   SRRVLSAPDGTKVSRFN---LMKLQGRQEAAAAGTDSHHAHHAFDELLHRPTTSSIVD 56


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +1

Query: 118 HARFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 231
           + R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 15  YPRLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 79  IWHWGSVDSISGSHARFQLSGN---SGRKHS 162
           ++ WGS+D+    H+RF  S N   +GR H+
Sbjct: 410 VYRWGSLDANHVGHSRFDSSENHMVTGRHHN 440


>12_02_0522 -
           19960092-19960595,19962737-19962880,19963042-19963131,
           19963215-19963320,19963400-19963574,19963849-19963951,
           19964382-19964636,19964726-19964803,19964908-19965000,
           19965091-19965222,19965898-19966002,19966127-19966201,
           19966284-19966340,19966419-19966532,19966613-19966756,
           19966886-19966969,19967071-19967164,19967244-19967369,
           19967507-19967580,19967672-19967875,19968234-19968388,
           19968860-19968947,19969505-19969730,19970235-19970286,
           19970766-19970958,19973221-19973314,19973744-19973788,
           19974874-19974896
          Length = 1210

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 247 AMSDAKHHPFSTSLQDRTFSVLF 315
           ++S AKH PF   L ++ + VLF
Sbjct: 818 SLSSAKHAPFLEKLNEKEYEVLF 840


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,060,453
Number of Sequences: 37544
Number of extensions: 195359
Number of successful extensions: 432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)