Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30865
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    67   2e-12
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    29   0.51 
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    29   0.68 
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   6.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   8.4  

>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 4/53 (7%)
 Frame = +1

Query: 256 VTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK----RQGNKPTAGR 402
           ++VT RDGRV+ L+ VYIRGS IRFLI+PDML+NAPMFK    R    PT GR
Sbjct: 44  ISVTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = +2

Query: 140 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 250
           IK+LHE +GH+VT E   G  YRGKLIEAEDNMNCQM
Sbjct: 5   IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQM 41


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKP 390
           +V +T +      +E + IRG+ IR+ ILPD L    +      KP
Sbjct: 42  AVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKP 87


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
 Frame = -1

Query: 248 FGNSYYPQLQLI-------SLYKLHRYLFHKSL-HDLPP 156
           + N Y+P+ + +       ++Y LHR + HKSL H LPP
Sbjct: 126 YENGYFPEKETLVEARNVGAVYALHRIMSHKSLQHALPP 164


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 416 IALFPRPAVGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSC 288
           I+LFP+  V +F   L I AF N   N KN   E  +  FS C
Sbjct: 223 ISLFPKSHVVIFHYYLGIVAFLNQ--NYKNASAELEI-AFSLC 262


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 583 YHSYILIYLSEKNTNFGNRTTVCSKIIXYVLKCNNKV 693
           + +YIL YL++++    NR T   K    +LK ++K+
Sbjct: 239 FDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKSSDKI 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,129
Number of Sequences: 5004
Number of extensions: 56498
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)