Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30865
(728 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 96 1e-19
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 96 1e-19
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 96 1e-19
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 96 1e-19
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 35 0.34
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 35 0.34
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 35 0.34
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 35 0.34
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 35 0.34
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 35 0.34
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 122 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 253
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMS 44
Score = 90.2 bits (214), Expect = 7e-18
Identities = 46/59 (77%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 420
++TVTYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 45 NITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 122 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 253
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMS 44
Score = 90.2 bits (214), Expect = 7e-18
Identities = 46/59 (77%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 420
++TVTYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 45 NITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 122 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 253
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMS 44
Score = 90.2 bits (214), Expect = 7e-18
Identities = 46/59 (77%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 420
++TVTYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 45 NITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 95.9 bits (228), Expect = 1e-19
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 122 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 253
MSIGVPIKVLHEAEGH+VTCETNTGEVYRGKLIEAEDNMNCQM+
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMS 44
Score = 90.2 bits (214), Expect = 7e-18
Identities = 46/59 (77%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 420
++TVTYRDGRVAQLE VYIRGSKIRFLILPDMLKNAPM K NK AGRGK+AIL
Sbjct: 45 NITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAIL 103
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 34.7 bits (76), Expect = 0.34
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 408
+V +T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 42 AVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 34.7 bits (76), Expect = 0.34
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 408
+V +T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 42 AVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 34.7 bits (76), Expect = 0.34
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 408
+V +T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 42 AVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 34.7 bits (76), Expect = 0.34
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 408
+V +T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 42 AVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 34.7 bits (76), Expect = 0.34
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 408
+V +T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 42 AVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 34.7 bits (76), Expect = 0.34
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Frame = +1
Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPD-------MLKNAPMFKRQGNKPTAGRGK 408
+V +T ++ QLE + IRG+ IR+ ILPD ++ P K + + AGRG+
Sbjct: 42 AVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,323,633
Number of Sequences: 237096
Number of extensions: 1793709
Number of successful extensions: 3464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3464
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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