Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30865
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p pro...    94   2e-19
AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclea...    94   2e-19
AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA...    94   2e-19
AE014296-2169|AAF49893.1|  124|Drosophila melanogaster CG10753-P...    32   0.92 
AY071359-1|AAL48981.1|  124|Drosophila melanogaster RE39488p pro...    31   1.2  
AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-P...    31   1.2  
AB028139-1|BAA78208.1|  881|Drosophila melanogaster Gal4 protein.      31   1.6  
BT021227-1|AAX33375.1|  124|Drosophila melanogaster RH43429p pro...    30   2.8  

>AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p
           protein.
          Length = 151

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 47/58 (81%), Positives = 50/58 (86%), Gaps = 3/58 (5%)
 Frame = +1

Query: 256 VTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 420
           +TVTYRDGR A LENVYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 46  ITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103



 Score = 93.5 bits (222), Expect = 3e-19
 Identities = 41/44 (93%), Positives = 43/44 (97%)
 Frame = +2

Query: 122 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 253
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMT 44


>AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclear
           ribonucleoproteinSm D3 protein.
          Length = 151

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 47/58 (81%), Positives = 50/58 (86%), Gaps = 3/58 (5%)
 Frame = +1

Query: 256 VTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 420
           +TVTYRDGR A LENVYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 46  ITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103



 Score = 93.5 bits (222), Expect = 3e-19
 Identities = 41/44 (93%), Positives = 43/44 (97%)
 Frame = +2

Query: 122 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 253
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMT 44


>AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA
           protein.
          Length = 151

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 47/58 (81%), Positives = 50/58 (86%), Gaps = 3/58 (5%)
 Frame = +1

Query: 256 VTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNK---PTAGRGKSAIL 420
           +TVTYRDGR A LENVYIRGSKIRFLILPDMLKNAPMFK+Q  K    TAGRGK+AIL
Sbjct: 46  ITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAIL 103



 Score = 93.5 bits (222), Expect = 3e-19
 Identities = 41/44 (93%), Positives = 43/44 (97%)
 Frame = +2

Query: 122 MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMT 253
           MSIGVPIKVLHEAEGH++TCET TGEVYRGKLIEAEDNMNCQMT
Sbjct: 1   MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMT 44


>AE014296-2169|AAF49893.1|  124|Drosophila melanogaster CG10753-PA
           protein.
          Length = 124

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDML 351
           SV +T ++     LE + IRG+ IR+ ILPD L
Sbjct: 42  SVRMTIKNRDPVHLETLSIRGNNIRYFILPDSL 74


>AY071359-1|AAL48981.1|  124|Drosophila melanogaster RE39488p
           protein.
          Length = 124

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDML 351
           SV +T ++     LE + IRG+ IR+ ILPD L
Sbjct: 42  SVRMTIKNRDHVHLETLSIRGNNIRYFILPDSL 74


>AE014298-1343|AAF46505.2| 3687|Drosophila melanogaster CG32702-PA
            protein.
          Length = 3687

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +2

Query: 122  MSIGVPIKVLHEAEGHVVTCETNTGEVY 205
            +++ VP++++ E +GH +T +T+ G +Y
Sbjct: 1706 LTVSVPLQLVEEFQGHYMTMDTSCGSIY 1733


>AB028139-1|BAA78208.1|  881|Drosophila melanogaster Gal4 protein.
          Length = 881

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -1

Query: 392 VGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSCATRPSLYVTVTES 249
           V L P  L  GA FN SGNI +  L    +TF++ +  P+L  T T S
Sbjct: 757 VPLTPSALFGGANFNQSGNIADSSLS---FTFTNSSNGPNLITTQTNS 801


>BT021227-1|AAX33375.1|  124|Drosophila melanogaster RH43429p
           protein.
          Length = 124

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 429 SCWSRTSRWKRWGPPWRLARWVR 497
           S W R  RW+RW   WR +RW R
Sbjct: 26  SWWIRRIRWRRW---WRWSRWRR 45


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,305,301
Number of Sequences: 53049
Number of extensions: 560372
Number of successful extensions: 1482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)