Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30865
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    81   1e-15
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    66   2e-11
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    32   0.48 

>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 35/42 (83%), Positives = 39/42 (92%)
 Frame = +2

Query: 125 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 250
           S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQL 44



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = +1

Query: 262 VTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 381
           VT+RDGR  QL+NV+IRG+KIRF+ILPDMLKNAPMFK  G
Sbjct: 49  VTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIG 88


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +1

Query: 262 VTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 372
           VT+RDGR  QL+NV+IRG+KIRF+ILPDMLKNAP FK
Sbjct: 35  VTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPXFK 71



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +2

Query: 167 HVVTCETNTGEVYRGKLIEAEDNMNCQM 250
           H+VT ET TGEVYRGKL EAEDNMNCQ+
Sbjct: 3   HMVTLETVTGEVYRGKLSEAEDNMNCQL 30


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = +1

Query: 253 SVTVTYRDGRVAQLENVYIRGSKIRFLILPDML 351
           +V++T ++    +L+ + IRG+ IR++ILPD L
Sbjct: 42  AVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPL 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,672,258
Number of Sequences: 27780
Number of extensions: 307811
Number of successful extensions: 795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)