Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30863
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   115   5e-27
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   1.2  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   4.9  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   6.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.6  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  115 bits (276), Expect = 5e-27
 Identities = 50/83 (60%), Positives = 70/83 (84%)
 Frame = +1

Query: 7   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 186
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 187 HYKGQQVGKVMQVYRKKFVVYIE 255
             KG++ GK+  VYRKKF++ IE
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIE 82



 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 255 RIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 371
           R+ REKANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 83  RVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 282 HHWPFLFESFNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVF 157
           ++W F   SF   N+ F +H+H    L+  + S Y++ F+ F
Sbjct: 20  NYWHFWLRSFMSNNRKFLVHIH----LIPHLNSLYSICFLGF 57


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 294 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 416
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 416 VFTLVFAKCSQSALCSAIEDCFAVFIH 336
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 170  FRLYVDTTKANRLAK*CRCIVKSLLYTLKDSKRKGQWCNSIC-RHSP 307
            FRL   T      A   +  V S  Y   + KR   WC+ IC R SP
Sbjct: 1050 FRLRTFTEPEITFAPTYKYDVHSEQYDSSEKKRVPAWCDRICYRGSP 1096


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,985
Number of Sequences: 5004
Number of extensions: 40635
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)