Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30862
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1085 + 33989863-33991179 56 2e-08
10_08_0089 + 14741715-14742332,14742543-14743004 36 0.025
11_05_0086 + 18964493-18965737,18965896-18966360 29 2.9
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 3.8
01_01_0928 + 7339796-7339806,7339923-7340043,7340463-7340549,734... 29 3.8
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486... 27 8.9
10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033 27 8.9
05_01_0080 - 535443-535481,535569-535698,536483-536586,536686-53... 27 8.9
03_06_0468 + 34153425-34153823 27 8.9
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 27 8.9
>02_05_1085 + 33989863-33991179
Length = 438
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 282 MHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFKVIMSKGPR--V 455
M N+G+ FNR+VW I +QFC +D+YNWD ++ + + +GPR
Sbjct: 296 MGNIGYAFNRTVWRKIHAKAKQFCTFDEYNWDITMWATVYPSFGSPVYSL---RGPRRSA 352
Query: 456 FHIGECGIH 482
H G+CG+H
Sbjct: 353 AHFGKCGLH 361
>10_08_0089 + 14741715-14742332,14742543-14743004
Length = 359
Score = 35.9 bits (79), Expect = 0.025
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 79 SLGTYLKTYQYHANGDKRKKQMTLN-YIQQVRMANEERRKRQDTQWNFQVYPNLYGNTQK 255
++G Y Y +NGD ++ ++ AN++ + R W FQ+ GN K
Sbjct: 53 TVGGYRWRIDYFSNGDCADSADYISLFLSLDERANKDVKVR--ASWRFQI--GYTGNVDK 108
Query: 256 LTSLLGTLACTTWGSVSIGPFGIT*WRY 339
SL ACTT+G +GP G W Y
Sbjct: 109 PPSLSTAKACTTFG---VGPDGSWSWGY 133
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 48 GPQLSAMRDNIAGHILKDLPVPRQRRQA 131
G +LSA+ D + GHIL LP R A
Sbjct: 16 GDRLSALSDGVIGHILSFLPAKEAARAA 43
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 81 AGHILKDLPVPRQRRQA*KTNDTELHTASADGERGAKE 194
+GHI ++ P R R T E+ T A GE+ KE
Sbjct: 157 SGHIARNCPTSRAARAQPATGSKEVATKPAGGEKPRKE 194
>01_01_0928 +
7339796-7339806,7339923-7340043,7340463-7340549,
7341230-7341637,7341726-7341789,7342654-7342793,
7342878-7343189,7343733-7344137
Length = 515
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 220 QVYPNLYGNTQKLTSLLGTLA---CTTW 294
++ PNLY N + SLLGT A C TW
Sbjct: 287 RINPNLYNNGKVCLSLLGTWAGSGCETW 314
>12_02_0483 +
19546295-19546397,19547163-19547482,19547606-19548611,
19549890-19549985,19550500-19551551
Length = 858
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 309 RSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFK 428
R VWHN M Q + + D+ + ++H + + Q+K K
Sbjct: 101 REVWHNEMREQRRNIFFFDWYENSQIIHFEEFFRTQKKGK 140
>10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033
Length = 156
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 141 NDTELHTASADGERGAKEASGHTVEFPSLPEPVREHAKVD 260
+D HTA A GE G + ++ LP P R H D
Sbjct: 43 HDDTPHTAQASGEYGGTATACTSIYKLELPSPARCHDDAD 82
>05_01_0080 -
535443-535481,535569-535698,536483-536586,536686-536903,
537755-537762,538146-538183,538475-538668,539168-539296,
539392-539481,539726-539839,540008-540154,540228-540293,
540876-540987
Length = 462
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 229 GKLGNSTVCPDASFAPRSPSAL 164
G L +S VCPDAS P SP L
Sbjct: 221 GLLMSSVVCPDASSIPVSPPML 242
>03_06_0468 + 34153425-34153823
Length = 132
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 277 ECQGVMSTFACSRTG-SGKLGNSTVCPDASFAPRSPSALAVCSSVSFVFYACLRWR 113
+C+ AC T + G + + P A+ AP PSA AV + AC WR
Sbjct: 78 QCRPEHGHRACHTTPLTNVAGGARIRPSATAAP--PSAAAVAAPADDTAAACAAWR 131
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = -1
Query: 261 CQLLRVPVQVRVNLEIPLCVLTL--------PSLLVRHPHLLYVVQCHLF 136
C LL V Q+ V+ ++PL L L S + +HP LL +VQ LF
Sbjct: 343 CSLLNVVEQIGVDEDLPLFALKLINSAIELGGSSIRKHPKLLSLVQDELF 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,561
Number of Sequences: 37544
Number of extensions: 330415
Number of successful extensions: 989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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