Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30862
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical pr...    94   8e-20
AF251126-1|AAF71273.1|  487|Caenorhabditis elegans UDP-GlcNAc:a-...    88   4e-18
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    30   1.5  
Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical
           protein C03E10.4 protein.
          Length = 487

 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 37/78 (47%), Positives = 51/78 (65%)
 Frame = +3

Query: 249 AKVDITPWHSSMHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFK 428
           A + + PW+SS HNMG    ++ W  I    E FC +DDYNWD+SL+ +S     Q +F+
Sbjct: 314 AHLGVHPWYSSKHNMGMALQKNTWQKIKGCSEMFCKWDDYNWDWSLMQISAKCLPQ-RFR 372

Query: 429 VIMSKGPRVFHIGECGIH 482
           VI +K PRV HIG+CG+H
Sbjct: 373 VIFTKSPRVIHIGDCGVH 390



 Score = 35.1 bits (77), Expect = 0.040
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   VAEDFIYMLNLLRATADRSCPQCEIISLGTYLKT 102
           +A D +++L+++ +   + C  CEIISLG YLK+
Sbjct: 272 LAPDALHVLDIIVSNRPKYCENCEIISLGFYLKS 305


>AF251126-1|AAF71273.1|  487|Caenorhabditis elegans
           UDP-GlcNAc:a-6-D-mannoside
           b1,2-N-acetylglucosaminyltransferase II protein.
          Length = 487

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 36/78 (46%), Positives = 50/78 (64%)
 Frame = +3

Query: 249 AKVDITPWHSSMHNMGFGFNRSVWHNIMEIQEQFCAYDDYNWDYSLLHLSQNRKNQEKFK 428
           A + + PW+SS HNMG    ++    I    E FC +DDYNWD+SL+ +S     Q +F+
Sbjct: 314 AHLGVHPWYSSKHNMGMALQKNTSQKIKGCSEMFCKWDDYNWDWSLMQISAKCLPQ-RFR 372

Query: 429 VIMSKGPRVFHIGECGIH 482
           VI +K PRV HIG+CG+H
Sbjct: 373 VIFTKSPRVIHIGDCGVH 390



 Score = 35.1 bits (77), Expect = 0.040
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   VAEDFIYMLNLLRATADRSCPQCEIISLGTYLKT 102
           +A D +++L+++ +   + C  CEIISLG YLK+
Sbjct: 272 LAPDALHVLDIIVSNRPKYCENCEIISLGFYLKS 305


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 106 QYHANGDKRKKQMTLNYIQQVRMANEE-RRKRQDTQWNFQVYPNLYGNTQKLTSLLGTLA 282
           ++H N D + + M + +   + + NEE   K ++ +     Y  L   T++   LL  + 
Sbjct: 148 EFHQNDDSKVQLMEMRFHMPIDLENEEDADKVEEFKKAVLAYAGLEAETEQPICLLTDIL 207

Query: 283 CTT 291
           CTT
Sbjct: 208 CTT 210


>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 249 RVPVQVRVNLEIPLCVLTLPSLLVRHPHL 163
           +VP  + +N+E+  CV  + S+L+  PH+
Sbjct: 627 QVPYHMHINVELMECVYLICSMLLEIPHM 655


>AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical
           protein F52H2.7 protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 109 YHANGDKRKKQMTLN-YIQQVRMANEERRKRQDTQWNFQVYPNLYGNTQKLT 261
           Y AN    +  +  N +++++RMA  E     D  ++F+VY  +YGN  +LT
Sbjct: 88  YSANDAIGRVNIDCNIFMERMRMAKTEVL---DETFSFKVYDTIYGNRGELT 136


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/89 (21%), Positives = 33/89 (37%)
 Frame = -3

Query: 289 LCMLECQGVMSTFACSRTGSGKLGNSTVCPDASFAPRSPSALAVCSSVSFVFYACLRWRG 110
           +CM +CQ   +T  C +  S +          S  P   S  + CSS +     C+R   
Sbjct: 55  VCMAQCQSSCTTPICQQQCSNQCNQQCTSITISSGPSCSSCQSACSS-ACTTPTCIRTCQ 113

Query: 109 TGRSLSMCPAILSRIADSCGPRSHAIDST 23
                ++C    +   + C  +   I +T
Sbjct: 114 RNSCSNLCNTGSNSCTNRCNSQCLQICTT 142


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = -3

Query: 364 SS*AQNCSCISIMLCQTDLLKPNPMLCMLECQGVMSTFACSRTGSGKLGNSTVCPDASFA 185
           SS   N +C+ +  C+++   P      ++C  +  +F CS    G   +  VC D +  
Sbjct: 201 SSDKNNPTCVDVNECESNPCHPG-----VDCINLPGSFVCSGCPKGYKTDGNVCIDVN-- 253

Query: 184 PRSPSALAVCSSVS 143
                 + VCS +S
Sbjct: 254 -ECEGEIRVCSPLS 266


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = -3

Query: 364 SS*AQNCSCISIMLCQTDLLKPNPMLCMLECQGVMSTFACSRTGSGKLGNSTVCPDASFA 185
           SS   N +C+ +  C+++   P      ++C  +  +F CS    G   +  VC D +  
Sbjct: 201 SSDKNNPTCVDVNECESNPCHPG-----VDCINLPGSFVCSGCPKGYKTDGNVCIDVN-- 253

Query: 184 PRSPSALAVCSSVS 143
                 + VCS +S
Sbjct: 254 -ECEGEIRVCSPLS 266


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical
           protein ZK430.5 protein.
          Length = 1276

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 473 RYTS*XVELQCFSVISKVQKLLQN 544
           R+TS  V  +CF  +  +QK++QN
Sbjct: 99  RFTSHYVSSECFDGLGSIQKMMQN 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,963
Number of Sequences: 27780
Number of extensions: 281482
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)