Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30859
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    27   2.5  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   7.7  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   7.7  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 253 SGKRVRCRRKDLVYVMIKMPINTTRELAVVMKYI-Y*YIFSILSQCSRKKHIL 98
           +GK +R R +DLV + IK+ +     L +    + Y +I  + +  +  KHIL
Sbjct: 99  NGKNIRHRDRDLVSLQIKLILQDADRLGIQFNIVDYTHILRV-AMYTGNKHIL 150


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 627 NIRLTLNYLHCDKIFIIYLFIYSICSGLRYYT-IIY 523
           ++RL  +YL    +   + F  S+  GL YYT IIY
Sbjct: 309 DMRLLFDYLEAFGVLDRFSFDMSLARGLDYYTGIIY 344


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -1

Query: 639 FLEQNIRLTLNYLHCDKIFIIYL----FIYSICSGLRYYTI 529
           FL++ +R+T ++ H ++  + YL    +I +I   ++YY I
Sbjct: 305 FLQEGLRITGDFKHQERCVLEYLESQKWINNITKDMKYYLI 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,222
Number of Sequences: 5004
Number of extensions: 46412
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)