Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30859
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical ...    30   1.8  
U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate trans...    28   5.4  
Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical
           protein C49A9.3 protein.
          Length = 573

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 654 VDHCGFLEQNIRLTLNYLHCDKIFIIYLFIYSIC 553
           V+H GF+  N+R  LN +  D IF   LF  +IC
Sbjct: 319 VEHIGFIVTNVRAKLNLVGKDLIFQNNLFGDAIC 352


>U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate
           transporter family protein6 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -1

Query: 582 IIYLFIYSICSGLRYYTIIYLHLFIHYCFVTK 487
           ++ L+++++C+GL  +TII + L   Y F+T+
Sbjct: 265 VLALYVFTVCAGLILHTIITVPLM--YFFITR 294


>Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical
           protein F21H7.12 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 645 CGFLEQNIRLTLNYLHCDKIFIIYLFIYSICSGLRYYTIIYLHLFIHYCFVTKLP*IDRY 466
           CG LE   RL  +   C  I  I +F++SI + + Y   I   ++I +C V+ L  +DR+
Sbjct: 122 CGTLESYDRLIHSDYQCSIIVPISVFVFSIVTCIVYLFSIVGSIYI-WC-VSGLTKLDRW 179


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
            T19A5.1 protein.
          Length = 1280

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 95   ISCLKCTTVSMPPHLKQFHKVSLSS 21
            I CL+C   + PPH++    VSL++
Sbjct: 1177 IGCLRCALHTAPPHMRDVALVSLAN 1201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,596
Number of Sequences: 27780
Number of extensions: 256679
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)