Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30859
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 104 YFVISCLKCTTVSMPPHLKQFHKVSLSSY 18
           YF+  CL+   ++   +L + H  SL  +
Sbjct: 284 YFIRGCLQTYLINASTYLNEVHTASLRKF 312


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 104 YFVISCLKCTTVSMPPHLKQFHKVSLSSY 18
           YF+  CL+   ++   +L + H  SL  +
Sbjct: 322 YFIRGCLQTYLINASTYLNEVHTASLRKF 350


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 412 STLFMPNLSRCELDWFEHV---ARKKWLE 335
           ++L + NLS   ++WF++       KWL+
Sbjct: 549 ASLLLLNLSENHIEWFDYAFIPGNLKWLD 577


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 28  RLTLWNCFKWGGMLTVVHF 84
           R   W  F WGG+  VV F
Sbjct: 554 RFQPWGPFTWGGIGVVVLF 572


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 372 IGLNMWQEKNGLKLLFRKRKTKW 304
           + L++   +  +K+ F+ R+TKW
Sbjct: 41  LALSLSLTETQVKIWFQNRRTKW 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,406
Number of Sequences: 438
Number of extensions: 3128
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)