Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30858
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 121 5e-28
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 111 5e-25
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 99 3e-21
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 89 3e-18
08_01_0010 + 80052-81419 28 6.2
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 8.2
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 121 bits (291), Expect = 5e-28
Identities = 55/87 (63%), Positives = 68/87 (78%)
Frame = -3
Query: 513 GSMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVA 334
G MH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 2 GRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIP 61
Query: 333 QVRFVTGKKILRIMKAMGLAPDLPEDL 253
V+ VTG KILRI+KA GLAP++PEDL
Sbjct: 62 LVKSVTGSKILRILKAHGLAPEIPEDL 88
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/52 (86%), Positives = 47/52 (90%)
Frame = -2
Query: 253 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 98
Y+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK LPP WK
Sbjct: 89 YFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 111 bits (266), Expect = 5e-25
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = -3
Query: 513 GSMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVA 334
G MH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 2 GRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAVP 61
Query: 333 QVRFVTGKKILRIMKAMGLAPDLPEDL 253
+ VTG KILR++K+ GLAP++PEDL
Sbjct: 62 LAQGVTGGKILRVLKSRGLAPEVPEDL 88
Score = 86.6 bits (205), Expect = 1e-17
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = -2
Query: 253 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 98
Y+LIKKAVAMRKHLERNRKDKD+KFRLILVESR+HRL RYY+ +P +K
Sbjct: 89 YFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/52 (86%), Positives = 47/52 (90%)
Frame = -2
Query: 253 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 98
Y+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK LPP WK
Sbjct: 128 YFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 179
Score = 97.5 bits (232), Expect = 7e-21
Identities = 53/97 (54%), Positives = 63/97 (64%), Gaps = 17/97 (17%)
Frame = -3
Query: 492 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 364
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 363 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDL 253
V+LRD HG+ V+ VTG KILRI+KA GLAP++PEDL
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDL 127
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 88.6 bits (210), Expect = 3e-18
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = -2
Query: 253 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 107
Y+LIKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP
Sbjct: 146 YFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = -3
Query: 423 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDL 253
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDL
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDL 145
>08_01_0010 + 80052-81419
Length = 455
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 415 LYIVGSQFQPGRDTAAVRQRRLGDTLTRSVH 507
+++VG F R AAVR+ R G + R VH
Sbjct: 236 VFVVGVAFAVARHPAAVRELRAGPSRMRVVH 266
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 462 RRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 349
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,447
Number of Sequences: 37544
Number of extensions: 284433
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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