Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30857
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    26   4.8  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   6.3  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    26   6.3  

>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 218 VNE*RRLCKRNKNVDKCFGIIFFIYC 141
           +NE  R+C  +     CFG+  F +C
Sbjct: 137 INELTRICNASFYATSCFGLYGFAFC 162


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 558 RFICLHVADHKWLTSTTLLR 499
           R+   HV  H WLTS+T  R
Sbjct: 260 RYSVKHVVQHPWLTSSTPFR 279


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 613 RWPE*KGQSFKYRGVRGYL 669
           RWPE  G+  +YR V G+L
Sbjct: 253 RWPEVFGKEVRYRTVLGFL 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,613
Number of Sequences: 5004
Number of extensions: 50853
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)