Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30857
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-4|AAL00858.1|  492|Caenorhabditis elegans Glutamate trans...    28   7.8  
U51998-3|AAL00857.1|  503|Caenorhabditis elegans Glutamate trans...    28   7.8  
U35250-2|AAB41910.1|  492|Caenorhabditis elegans CeGlt-1 protein.      28   7.8  
U35250-1|AAB41909.1|  503|Caenorhabditis elegans CeGlt-2 protein.      28   7.8  
D86741-1|BAA21840.1|  503|Caenorhabditis elegans glutamate trans...    28   7.8  
D86740-1|BAA13164.1|  503|Caenorhabditis elegans glutamate trans...    28   7.8  

>U51998-4|AAL00858.1|  492|Caenorhabditis elegans Glutamate
           transporter family protein1, isoform b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 46  TSCLNVGGAVVMCIGSQTALHQVGHEFVHIFKQ 144
           TS +NV G +V CI    +L Q+G E  H+  Q
Sbjct: 189 TSGMNVLGVIVFCIAIGISLSQLGQE-AHVMVQ 220


>U51998-3|AAL00857.1|  503|Caenorhabditis elegans Glutamate
           transporter family protein1, isoform a protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 46  TSCLNVGGAVVMCIGSQTALHQVGHEFVHIFKQ 144
           TS +NV G +V CI    +L Q+G E  H+  Q
Sbjct: 200 TSGMNVLGVIVFCIAIGISLSQLGQE-AHVMVQ 231


>U35250-2|AAB41910.1|  492|Caenorhabditis elegans CeGlt-1 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 46  TSCLNVGGAVVMCIGSQTALHQVGHEFVHIFKQ 144
           TS +NV G +V CI    +L Q+G E  H+  Q
Sbjct: 189 TSGMNVLGVIVFCIAIGISLSQLGQE-AHVMVQ 220


>U35250-1|AAB41909.1|  503|Caenorhabditis elegans CeGlt-2 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 46  TSCLNVGGAVVMCIGSQTALHQVGHEFVHIFKQ 144
           TS +NV G +V CI    +L Q+G E  H+  Q
Sbjct: 200 TSGMNVLGVIVFCIAIGISLSQLGQE-AHVMVQ 231


>D86741-1|BAA21840.1|  503|Caenorhabditis elegans glutamate
           transporter protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 46  TSCLNVGGAVVMCIGSQTALHQVGHEFVHIFKQ 144
           TS +NV G +V CI    +L Q+G E  H+  Q
Sbjct: 200 TSGMNVLGVIVFCIAIGISLSQLGQE-AHVMVQ 231


>D86740-1|BAA13164.1|  503|Caenorhabditis elegans glutamate
           transporter protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 46  TSCLNVGGAVVMCIGSQTALHQVGHEFVHIFKQ 144
           TS +NV G +V CI    +L Q+G E  H+  Q
Sbjct: 200 TSGMNVLGVIVFCIAIGISLSQLGQE-AHVMVQ 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,177
Number of Sequences: 27780
Number of extensions: 275565
Number of successful extensions: 438
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)