Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30857
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.8  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   9.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 72  RCDVYRLANRLTPGGS 119
           +C++Y     L PGGS
Sbjct: 61  KCEIYAKCEFLNPGGS 76


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 188 NKNVDKCFGIIFFIYCLN 135
           NK+ DKC   + FI C +
Sbjct: 122 NKSTDKCENGLNFIICFS 139


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 277 NTFKPLKFLKTFIMG*LITDIFLKEPFEHFLILVFF 384
           N   PL+    F+ G  +TD+      E FL L+ F
Sbjct: 9   NNVSPLQCTSPFLGGPQLTDVCSASNGELFLALLNF 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,878
Number of Sequences: 438
Number of extensions: 3587
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)