Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30856
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    58   1e-09
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    33   0.035
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    30   0.33 
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.3  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   5.3  

>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 27/91 (29%), Positives = 53/91 (58%)
 Frame = +1

Query: 235 TETHQESIDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFI 414
           T+  +  I+KIP + E L+   +D S++   L++++++ ++ KKIIEYIG  E +L+ F 
Sbjct: 590 TKRLRSLIEKIPVEAESLWALPIDWSKVTEDLLKEEMQAFVTKKIIEYIGIQEDSLITFT 649

Query: 415 CSKVLAGSAPQGVLDDVQMVLDEEAEVFVVK 507
              +      + ++ ++ + L E+A  FV K
Sbjct: 650 IDHIRQHKGAEQLVSELDLALAEDAPEFVSK 680


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +1

Query: 316 IDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEE 486
           I + + +KKI PWIN +  +     + TL  F+ SK    S P+G L+D+Q    EE
Sbjct: 130 IVDCIKQKKILPWINYRTFQ-ASSAQATL-SFVASK---PSQPEGNLEDIQTSSQEE 181


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 256  IDKIPTQKEQLFQYKLDASQIDNTLMEKK---IRPWINKKII 372
            +++I T     F+Y+L  S + +T    +   +RPWIN KII
Sbjct: 1506 LEEIGTMSSSSFEYQLVRSSLSDTKDTFRSCFLRPWINSKII 1547


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 244  HQESIDKIPTQKEQLFQYKLDASQIDNTLMEKKIRP 351
            H E+ D + T K+   +   D+ ++  TLM + IRP
Sbjct: 1246 HLETEDYMVTDKQSAVEKTHDSPKLGKTLMGQDIRP 1281


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 369 DLLVDPWTYLLLHE 328
           +LL+DPW  L LHE
Sbjct: 75  ELLIDPWRKLTLHE 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,964
Number of Sequences: 5004
Number of extensions: 22378
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)