Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30856
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 77 1e-14
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 29 2.4
10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430 29 2.4
06_02_0265 - 13586552-13587985 28 5.5
11_03_0144 + 10724538-10724753,10726127-10726186 28 7.2
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 7.2
01_03_0054 + 12057600-12057917 28 7.2
05_03_0282 + 11582894-11582988,11583137-11583207,11583764-115838... 27 9.6
04_01_0130 + 1431176-1431343,1431759-1432016 27 9.6
01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416 27 9.6
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = +1
Query: 247 QESIDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
++ ID IP KE+LF Y ++ + D + +++RPWI KKIIE++GE E TLVD+I S
Sbjct: 811 KQLIDMIPRTKEELFAYDINWAIYDKHELHERMRPWIAKKIIEFLGEEESTLVDYIVSCT 870
Query: 427 LAGSAPQGVLDDVQMVLDEEAEVFVVK 507
+L+ +Q +LD EAE+FV+K
Sbjct: 871 KDHVQASKMLELLQSILDVEAEMFVLK 897
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 439 APQGVLDDVQMVLDEEAEVFVVKSG 513
APQ VL+ + +LD AEVF+ + G
Sbjct: 1724 APQSVLEGLNAILDHRAEVFIPELG 1748
>10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430
Length = 306
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = -2
Query: 422 LLQMKSTRVGSGSPMYSMIFLLI-----HGRIFFSMSVLSICEASSLYWNS 285
LL+ K + VGSG + +F+ + +GR+F ++ +C + SL+W S
Sbjct: 84 LLRQKHSVVGSGVDYWPGVFVSVVPGTFYGRLFPERTMHLVCSSFSLHWLS 134
>06_02_0265 - 13586552-13587985
Length = 477
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 400 LVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVKSGGCSSTSW 534
+VD I +++ A QGVL+ V + + A + K GG S T++
Sbjct: 413 IVDAILRRIMESDAQQGVLERVMAMKESAAAAW--KEGGSSCTAF 455
>11_03_0144 + 10724538-10724753,10726127-10726186
Length = 91
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 126 CAKAACGRRTRPCRARSVGRAVHADGAAAV 37
CA+ A G T PC A + G A+G + V
Sbjct: 30 CAEQAAGVSTSPCSAAAAGGGREAEGKSCV 59
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 3 GLQLSAN-DKLPEPPQPHQRGPHARRSGRGRAECAA 107
GL+L+A LP PP P P RRS A AA
Sbjct: 75 GLRLAARRPNLPPPPAPAPASPAPRRSASATAVLAA 110
>01_03_0054 + 12057600-12057917
Length = 105
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 330 HGEEDTSMDQQEDHRVHRRAGAHSRRLHL 416
HG +DT D + +HRRAG+ + L +
Sbjct: 34 HGGDDTLCDPECAEELHRRAGSEDKTLRV 62
>05_03_0282 +
11582894-11582988,11583137-11583207,11583764-11583816,
11583988-11584011
Length = 80
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 316 IDNTLMEKKIRPWI--NKKIIEYIGEPEPTLVDFICS 420
+DNTL K++ W+ N + + +IG+ + T ++C+
Sbjct: 1 MDNTLTSKEVFTWVNSNNQWLLHIGDIDRTSKSYVCT 37
>04_01_0130 + 1431176-1431343,1431759-1432016
Length = 141
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 304 PVCTGTVVPSAWGSCRWTLD 245
PV G +V WG C W LD
Sbjct: 112 PVGKGCIVVGFWGRCGWLLD 131
>01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416
Length = 347
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 353 HGRIFFSMSVLSICEASSLYWNS 285
+GR+F + SV +C SSL+W S
Sbjct: 122 YGRLFPAKSVHFVCSCSSLHWLS 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,530,968
Number of Sequences: 37544
Number of extensions: 204193
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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