Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30856
(642 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC113391-1|AAI13392.1| 839|Homo sapiens RBM25 protein protein. 132 8e-31
BC113389-1|AAI13390.1| 839|Homo sapiens RBM25 protein protein. 132 8e-31
AF109907-1|AAC97961.1| 735|Homo sapiens S164 protein. 132 8e-31
AC004858-3|AAF19255.1| 784|Homo sapiens WUGSC:H_DJ0687K01.2 pro... 132 8e-31
L40392-1|AAC41999.1| 273|Homo sapiens protein ( Homo sapiens (c... 129 9e-30
BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processin... 32 1.5
BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processin... 32 1.5
AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processin... 32 1.5
AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processin... 32 1.5
AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear rib... 32 1.5
AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA sp... 32 1.5
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 8.0
BC028708-1|AAH28708.2| 1237|Homo sapiens chromosome 20 open read... 30 8.0
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 8.0
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 8.0
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 8.0
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 8.0
AL161658-2|CAI40813.1| 1173|Homo sapiens chromosome 20 open read... 30 8.0
AL121721-1|CAI19156.1| 1173|Homo sapiens chromosome 20 open read... 30 8.0
AL049648-2|CAI42250.1| 1173|Homo sapiens chromosome 20 open read... 30 8.0
AL035454-3|CAI42114.1| 1173|Homo sapiens chromosome 20 open read... 30 8.0
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.0
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.0
>BC113391-1|AAI13392.1| 839|Homo sapiens RBM25 protein protein.
Length = 839
Score = 132 bits (320), Expect = 8e-31
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +1
Query: 256 IDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKVLAG 435
I+KIPT K +LF Y LD S +D+ LME++IRPWINKKIIEYIGE E TLVDF+CSKV+A
Sbjct: 738 IEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAH 797
Query: 436 SAPQGVLDDVQMVLDEEAEVFVVK 507
S+PQ +LDDV MVLDEEAEVF+VK
Sbjct: 798 SSPQSILDDVAMVLDEEAEVFIVK 821
>BC113389-1|AAI13390.1| 839|Homo sapiens RBM25 protein protein.
Length = 839
Score = 132 bits (320), Expect = 8e-31
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +1
Query: 256 IDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKVLAG 435
I+KIPT K +LF Y LD S +D+ LME++IRPWINKKIIEYIGE E TLVDF+CSKV+A
Sbjct: 738 IEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAH 797
Query: 436 SAPQGVLDDVQMVLDEEAEVFVVK 507
S+PQ +LDDV MVLDEEAEVF+VK
Sbjct: 798 SSPQSILDDVAMVLDEEAEVFIVK 821
>AF109907-1|AAC97961.1| 735|Homo sapiens S164 protein.
Length = 735
Score = 132 bits (320), Expect = 8e-31
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +1
Query: 256 IDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKVLAG 435
I+KIPT K +LF Y LD S +D+ LME++IRPWINKKIIEYIGE E TLVDF+CSKV+A
Sbjct: 634 IEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAH 693
Query: 436 SAPQGVLDDVQMVLDEEAEVFVVK 507
S+PQ +LDDV MVLDEEAEVF+VK
Sbjct: 694 SSPQSILDDVAMVLDEEAEVFIVK 717
>AC004858-3|AAF19255.1| 784|Homo sapiens WUGSC:H_DJ0687K01.2
protein.
Length = 784
Score = 132 bits (320), Expect = 8e-31
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +1
Query: 256 IDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKVLAG 435
I+KIPT K +LF Y LD S +D+ LME++IRPWINKKIIEYIGE E TLVDF+CSKV+A
Sbjct: 683 IEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAH 742
Query: 436 SAPQGVLDDVQMVLDEEAEVFVVK 507
S+PQ +LDDV MVLDEEAEVF+VK
Sbjct: 743 SSPQSILDDVAMVLDEEAEVFIVK 766
>L40392-1|AAC41999.1| 273|Homo sapiens protein ( Homo sapiens
(clone S164) mRNA, 3' end of cds. ).
Length = 273
Score = 129 bits (311), Expect = 9e-30
Identities = 60/84 (71%), Positives = 70/84 (83%)
Frame = +1
Query: 256 IDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKVLAG 435
I+KIPT K +LF Y LD S +D+ LME++IRPWINKKIIEYIGE E TLVD +CSKV+A
Sbjct: 172 IEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDXVCSKVMAH 231
Query: 436 SAPQGVLDDVQMVLDEEAEVFVVK 507
S PQ +LDDV MVLDEEAEVF+VK
Sbjct: 232 SXPQSILDDVAMVLDEEAEVFIVK 255
>BC001954-1|AAH01954.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 340 KIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVK 507
+++PWI K + +G EPT+V + V G + D ++ LD+ FV K
Sbjct: 10 ELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDK 65
>BC000184-1|AAH00184.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 340 KIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVK 507
+++PWI K + +G EPT+V + V G + D ++ LD+ FV K
Sbjct: 10 ELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDK 65
>AL611942-1|CAH70312.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog (S. cerevisiae) protein.
Length = 683
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 340 KIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVK 507
+++PWI K + +G EPT+V + V G + D ++ LD+ FV K
Sbjct: 10 ELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDK 65
>AK222825-1|BAD96545.1| 683|Homo sapiens PRP3 pre-mRNA processing
factor 3 homolog protein.
Length = 683
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 340 KIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVK 507
+++PWI K + +G EPT+V + V G + D ++ LD+ FV K
Sbjct: 10 ELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDK 65
>AF016370-1|AAC51926.1| 683|Homo sapiens U4/U6 small nuclear
ribonucleoprotein hPrp3 protein.
Length = 683
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 340 KIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVK 507
+++PWI K + +G EPT+V + V G + D ++ LD+ FV K
Sbjct: 10 ELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDK 65
>AF001947-1|AAC09069.1| 682|Homo sapiens U4/U6-associated RNA
splicing factor protein.
Length = 682
Score = 32.3 bits (70), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 340 KIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVK 507
+++PWI K + +G EPT+V + V G + D ++ LD+ FV K
Sbjct: 10 ELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDK 65
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +1
Query: 283 QLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
+ + K+D S+++ + I+PWI K++ E +G + +++FI +++
Sbjct: 32 ECLEKKVDMSKVNLEV----IKPWITKRVTEILGFEDDVVIEFIFNQL 75
>BC028708-1|AAH28708.2| 1237|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1237
Score = 29.9 bits (64), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 375 LYDLLVDPWTYLLLHERVIDLR 310
LY +PW L H+R IDLR
Sbjct: 1139 LYSYFTEPWCLALFHDRFIDLR 1160
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +1
Query: 283 QLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
+ + K+D S+++ + I+PWI K++ E +G + +++FI +++
Sbjct: 32 ECLEKKVDMSKVNLEV----IKPWITKRVTEILGFEDDVVIEFIFNQL 75
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +1
Query: 283 QLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
+ + K+D S+++ + I+PWI K++ E +G + +++FI +++
Sbjct: 32 ECLEKKVDMSKVNLEV----IKPWITKRVTEILGFEDDVVIEFIFNQL 75
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +1
Query: 283 QLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
+ + K+D S+++ + I+PWI K++ E +G + +++FI +++
Sbjct: 32 ECLEKKVDMSKVNLEV----IKPWITKRVTEILGFEDDVVIEFIFNQL 75
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +1
Query: 283 QLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
+ + K+D S+++ + I+PWI K++ E +G + +++FI +++
Sbjct: 32 ECLEKKVDMSKVNLEV----IKPWITKRVTEILGFEDDVVIEFIFNQL 75
>AL161658-2|CAI40813.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 375 LYDLLVDPWTYLLLHERVIDLR 310
LY +PW L H+R IDLR
Sbjct: 1075 LYSYFTEPWCLALFHDRFIDLR 1096
>AL121721-1|CAI19156.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 375 LYDLLVDPWTYLLLHERVIDLR 310
LY +PW L H+R IDLR
Sbjct: 1075 LYSYFTEPWCLALFHDRFIDLR 1096
>AL049648-2|CAI42250.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 375 LYDLLVDPWTYLLLHERVIDLR 310
LY +PW L H+R IDLR
Sbjct: 1075 LYSYFTEPWCLALFHDRFIDLR 1096
>AL035454-3|CAI42114.1| 1173|Homo sapiens chromosome 20 open reading
frame 26 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 375 LYDLLVDPWTYLLLHERVIDLR 310
LY +PW L H+R IDLR
Sbjct: 1075 LYSYFTEPWCLALFHDRFIDLR 1096
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +1
Query: 283 QLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
+ + K+D S+++ + I+PWI K++ E +G + +++FI +++
Sbjct: 32 ECLEKKVDMSKVNLEV----IKPWITKRVTEILGFEDDVVIEFIFNQL 75
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +1
Query: 283 QLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKV 426
+ + K+D S+++ + I+PWI K++ E +G + +++FI +++
Sbjct: 32 ECLEKKVDMSKVNLEV----IKPWITKRVTEILGFEDDVVIEFIFNQL 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,530,434
Number of Sequences: 237096
Number of extensions: 928314
Number of successful extensions: 2730
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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