Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30855
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   2.6  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    27   3.4  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   4.5  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   4.5  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   7.9  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 207 FCGHRNFLPQQYRNLHSTNM 266
           FC  RN LP QY+++ +T++
Sbjct: 81  FCLQRNMLPPQYKDISNTSL 100


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 231 VGNFDGRKNRAFLVIFLNFNIIYKIFLKHQLYHQSCQTLLMSTRYF 94
           + N D +  ++ L++F+N  ++  + L+H L     + L     YF
Sbjct: 257 ISNADFQDKKSNLILFINNRLVESVELRHALEETYAKYLHKGASYF 302


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 226 KFRWPQKSSVPSYISQL*YNLQNIFKTSIVSSKLSNP 116
           +F +P  +S P++ S L  +     KTS+  SKL +P
Sbjct: 181 QFDYPSLNSSPTFNSNLPISSSRFEKTSLSDSKLVSP 217


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 562 QAHTAHQHLSTSCCRAVQFSYTFPSASIES 473
           Q HT H   +TS   A   S +FP ASI +
Sbjct: 613 QEHTTHSSHTTSDINAFPNSQSFPRASIHT 642


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 135 DTIDVLKIFCKLY*S*EI*LGTLDFCGHRNFLPQQYRNLHSTNMHYCINFILASG 299
           +T++   + C++  S  I +GT D  G  N + +  R L      YC+NF+L  G
Sbjct: 198 ETVEPCAVVCRMAPS-WIRIGTFDLQGINNQI-ESLRKLAD----YCLNFVLKDG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,409
Number of Sequences: 5004
Number of extensions: 52224
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)