Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30855
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0458 + 14280953-14281866,14281964-14282912                       29   2.7  
11_06_0764 + 27108979-27110018,27110176-27112270                       29   3.5  

>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 203 RFLRPSKFPTATVSQLTLNEHALLYKFYLGEWGHQLHAILTI 328
           RFL  S  P      L+   HALL K  L    H +H+++TI
Sbjct: 131 RFLSSSSPPPDAPRHLSPVAHALLEKIDLNSHDHTVHSLITI 172


>11_06_0764 + 27108979-27110018,27110176-27112270
          Length = 1044

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +2

Query: 233  ATVSQLTLNEHALLYKFYLGEWGHQLHAILTIIYFTGYCTL*SLKIN*LTDKSFNKVADS 412
            A++ QLT      +YK  + E       +L+ I + G C L +L IN    K  N     
Sbjct: 803  ASLHQLTGLRKLAIYKLKISEENDTFKELLSSIEYLGSCGLQTLAINDENSKFIN----- 857

Query: 413  APICLKLHFTSPPPRFLLRIRFN 481
                  L+  S PPR+L+ +  +
Sbjct: 858  -----SLYNMSAPPRYLVSLELS 875


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,048
Number of Sequences: 37544
Number of extensions: 320074
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)