Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30855
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81113-7|CAI79236.1|  351|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z83226-4|CAI79261.2|  206|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
           protein C05A9.1 protein.
          Length = 1283

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +2

Query: 440 TSPPPRFLLRIRFNRSGGECVTKLDSSATAGAEVLMCSVSLYG*TPLSCASVQ*SRHDFY 619
           T P    L  I FN  GGEC+  + +S +  + V+   +  Y    +    +    +D Y
Sbjct: 416 TRPDVPVLKEISFNVQGGECIALVGASGSGKSTVIQLLLHYYN---IDSGRISIDGNDIY 472

Query: 620 YYTISEAVVASGI 658
              I +   A G+
Sbjct: 473 NINIKQLRQAMGV 485


>Z81113-7|CAI79236.1|  351|Caenorhabditis elegans Hypothetical
           protein T03F6.7 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 547 HQHLSTSCCRAVQFS 503
           H+HLST CCR +Q +
Sbjct: 204 HEHLSTICCRQIQLN 218


>Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical
           protein T16G12.8 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 404 ADSAPICLKLHFTSPPPRFLLRIRFNRSGGECVTKLDSSATAGAEVL 544
           + S P  LK+++TSPPPR    +   + G EC   L   AT  A ++
Sbjct: 11  SQSVP-ALKINYTSPPPR-AYSLDERQKGVECFAMLGWVATFPAMII 55


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 289 WRVGPSTSCNFNHYLLYWLLYP 354
           W +  +  C +N  LL WLL+P
Sbjct: 49  WALQRTLKCQYNRVLLIWLLFP 70


>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 279 LYNNACSLSVSCDTVAVGNFDGRKNRAFLVIFLNFNIIY 163
           +Y N   + V CDT + G +   ++R      +NFNI Y
Sbjct: 212 IYPNGSPVQVYCDTTSYGTYTVIQSRGATGENVNFNITY 250


>Z83226-4|CAI79261.2|  206|Caenorhabditis elegans Hypothetical
           protein F43D2.6 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 216 HRNFLPQQYRNLHSTNMHY--CINFILASGAINFMQF*PLF 332
           HR   PQQY ++H+ N  Y  C  F +  G + F    P +
Sbjct: 118 HRRRNPQQYESVHNDNGWYPICCGFGIPMGTVVFSTHPPQY 158


>AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.6 protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -3

Query: 255 SVSCDTVAVGNFDGRKNRAF----LVIFLNFNIIYKIFLKHQLYHQSCQTLLMS 106
           S+SC  + +  F  R+NR      L+IF+ +  + K++ K +   +SC  LL++
Sbjct: 132 SISCAQI-IDFFKFRENRYLKIVSLIIFMQYFQMTKVYFKQKRKEKSCAGLLLA 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,956
Number of Sequences: 27780
Number of extensions: 296574
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)