Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30852
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 136 2e-33
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 136 2e-33
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.2
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 2.2
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 2.9
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.9
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 5.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 6.8
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 6.8
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 9.0
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 9.0
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.0
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 9.0
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 136 bits (329), Expect = 2e-33
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +3
Query: 255 YEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMR 434
YEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQT MR
Sbjct: 57 YEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMR 116
Query: 435 GAFGKPQGTVARVRIXQPIMSVXSR 509
AFGKP G VARV I Q +MSV ++
Sbjct: 117 HAFGKPNGLVARVNIGQVLMSVRTK 141
Score = 80.6 bits (190), Expect = 1e-16
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +1
Query: 124 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDD 255
KNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS++
Sbjct: 13 KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNE 56
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 136 bits (328), Expect = 2e-33
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +3
Query: 255 YEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMR 434
YEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQT MR
Sbjct: 57 YEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMR 116
Query: 435 GAFGKPQGTVARVRIXQPIMSVXSR 509
AFGKP G VARV I Q +MSV ++
Sbjct: 117 HAFGKPNGLVARVNIGQILMSVRTK 141
Score = 80.6 bits (190), Expect = 1e-16
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +1
Query: 124 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDD 255
KNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS++
Sbjct: 13 KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNE 56
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 330 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMR 434
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -1
Query: 324 SSLRGTYCSRYVLPPKPLSSAVHIVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPR 145
S L+ +C+++ + S A HI+ H V A+ K V S + + DT L T
Sbjct: 54 SILKCLHCNKWFCNVRGKSGASHIISHLVRARHKQVALHS-HSSLSDTVLECYNCGTRNV 112
Query: 144 FRIRFI 127
F + FI
Sbjct: 113 FLLGFI 118
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 145 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDD 255
S FC PDPK K A DD P + H+ S+D
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 461 STLRLAKRTTHPSLEPISSS 402
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 286 ASKASELSCSYRRTPSARTVESRQRSLSSYPNRRYGSWDQ 167
+S SEL C+Y T S V++ ++ S + Y + DQ
Sbjct: 238 SSSTSELPCTYGNTSSIFQVKNEMSNIKSAISEGYIAHDQ 277
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 155 VGVYLIPRSVSSIWV 199
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 169 DPKIRIFDLGKKRATVDDFPLC 234
DPK+R+F KRAT + C
Sbjct: 320 DPKLRVFPFTTKRATHSELLRC 341
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 246 VRRYEQLSSEALEAGRICCN 305
V+ E LSS+ + RICCN
Sbjct: 258 VKTSESLSSQQMSCLRICCN 277
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 203 RERPLTTFHCACTWC 247
R RP +T H +CT+C
Sbjct: 459 RSRPDSTSHASCTYC 473
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 259 SYRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPD 155
+YR +++ ++SR R L + G D+ HPD
Sbjct: 76 TYRFNWASKKLDSRLRQLGAQSFSSRGEGDEQHPD 110
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 297 RYVLPPKPLSSAVHIVGHQVHA--QWKVVNGRSLLTQIED 184
+Y++ SSA I+GH+++ +++V+ R+LL +D
Sbjct: 59 KYLILATEKSSAAQILGHKIYRVHKFEVIPYRNLLADDQD 98
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 292 RPASKASELSCSYRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYF 125
R +S+ + R P +V S SL R +D +HP+ T+ SD YF
Sbjct: 91 RSSSRRDLMGMIARTFPEFSSVNSLSPSLFQLIVNRM-RFDAIHPEWTNGSDDEYF 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,262
Number of Sequences: 5004
Number of extensions: 44355
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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