Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30852
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 137 4e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 134 4e-32
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 132 2e-31
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 29 1.7
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 28 3.9
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 28 5.2
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 6.8
01_01_0698 - 5400401-5401015 27 6.8
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678... 27 9.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 137 bits (332), Expect = 4e-33
Identities = 62/81 (76%), Positives = 70/81 (86%)
Frame = +3
Query: 258 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRG 437
E +SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQT MRG
Sbjct: 58 ENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 117
Query: 438 AFGKPQGTVARVRIXQPIMSV 500
AFGKPQGT ARV I Q ++SV
Sbjct: 118 AFGKPQGTCARVDIGQVLLSV 138
Score = 81.4 bits (192), Expect = 4e-16
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = +1
Query: 124 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVS 249
KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS
Sbjct: 13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVS 54
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 134 bits (324), Expect = 4e-32
Identities = 60/81 (74%), Positives = 70/81 (86%)
Frame = +3
Query: 258 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRG 437
E ++SEALEA RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQT MRG
Sbjct: 54 ENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 113
Query: 438 AFGKPQGTVARVRIXQPIMSV 500
AFGKPQGT ARV I Q ++SV
Sbjct: 114 AFGKPQGTCARVDIGQVLLSV 134
Score = 77.4 bits (182), Expect = 6e-15
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +1
Query: 124 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVS 249
KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS
Sbjct: 9 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVS 50
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 132 bits (318), Expect = 2e-31
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +3
Query: 258 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTXMRG 437
E +SSEALEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQT MRG
Sbjct: 365 ENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRG 424
Query: 438 AFGKPQGTVARVRIXQPIMSVXSR 509
AFGKP GT ARVRI Q ++SV R
Sbjct: 425 AFGKPTGTCARVRIGQVLLSVRCR 448
Score = 86.6 bits (205), Expect = 1e-17
Identities = 35/42 (83%), Positives = 40/42 (95%)
Frame = +1
Query: 124 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVS 249
KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS
Sbjct: 320 KNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVS 361
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 136 YPKSRFCRGVPDPKIRIFDLGKKRAT-VDDFPLCVHLVSDDMNS*AQRLWRQDVS 297
YP + RG DP RI GK AT V+D ++ + D+ Q+ ++Q VS
Sbjct: 711 YPFTSSIRGKDDPLTRIVVRGKSMATRVEDLFNLIYCILQDVQFTEQQRFKQFVS 765
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +3
Query: 201 EESDR*RLSTVRALGVRRYEQLSSEALEAGRICCNKYLVKNCGKD 335
+E DR L++VR G YE L EA +G+I KYLV+ G D
Sbjct: 107 DEDDRQSLTSVRMEG---YEPLF-EAASSGKIDLCKYLVEELGFD 147
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -3
Query: 346 IWN*SFPQFFTRYLLQQIRPASKASELSCSYRRTPSARTVESRQR 212
+WN F + F RYL + + + C R+ P A + + R
Sbjct: 550 LWNWEFEEEFQRYLPTYLDVLHEVDTMDCQERKMPGAYSEQRADR 594
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 229 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 113
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>01_01_0698 - 5400401-5401015
Length = 204
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 518 STCPRXHGHDGLSNANTC 465
S PR HGH GL+ +++C
Sbjct: 180 SNSPRDHGHGGLTRSSSC 197
>09_06_0177 +
21365314-21366100,21367451-21367578,21367715-21367870,
21368006-21368196,21369392-21369434,21369537-21369627,
21369859-21369935,21370278-21370366,21370474-21370657,
21370885-21371138,21371465-21371567,21371646-21371977,
21372060-21372504
Length = 959
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 303 CSRYVLPPKPLSSAVHIVGHQVHAQWKVVNGRSLLTQIED 184
C ++ P L+ + V + W V+N RSL T +ED
Sbjct: 201 CKFWIRTPNLLTMCLDGVECKSSLYWTVLNNRSLFTVLED 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,581
Number of Sequences: 37544
Number of extensions: 326377
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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