Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30849
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   4.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   6.1  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   8.1  

>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 73  SIKPVKHVLFDKRVKH 120
           ++ PVKH L +K+VKH
Sbjct: 212 TLTPVKHSLMEKKVKH 227


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 46   LSNTPSIKISIKPVKHVLFDKRVKHTVK*FDKQFDRL 156
            +S+  S+   ++PVK+VLF+  V  +++  D+   RL
Sbjct: 1780 ISSFDSLSTLLRPVKNVLFETNVPKSLRKVDELCRRL 1816


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 411 FIWY*RPIPAPLGSLTKISTIFDVVLFF 494
           F WY    PAPL S T++S I   +  F
Sbjct: 355 FDWYLHNDPAPLYSFTRVSGIVTYMKIF 382


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 520 WRNKVLLFKKNKTTSNIVEIFVKDPS 443
           W+N +L  K  K+    +  F +DPS
Sbjct: 195 WQNSILFDKSKKSILTCLHYFPRDPS 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,799
Number of Sequences: 5004
Number of extensions: 43048
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)