Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30849
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    29   2.0  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    27   8.2  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -3

Query: 567 YLQRVSRHIISNYDSYGAIRFCYLKKIKQRQISLKFLLKTRAEPEWVASTK*NA---FLQ 397
           ++    +  +S+YDS   ++  YL+   +RQ S+  LL    +  W  + K N+   F++
Sbjct: 534 FMSTRKKQYLSSYDSLKVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFME 593

Query: 396 R*MSLKP 376
             + ++P
Sbjct: 594 NHIPMRP 600


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 7   SCLTNPPIHLQTCLSNTPSIKI 72
           SC ++PPI+L+  L +TP +K+
Sbjct: 175 SCSSDPPINLEWTLCSTPLMKV 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,537
Number of Sequences: 37544
Number of extensions: 225559
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)