Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30847
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      107   2e-24
08_02_1181 - 24985963-24986242,24987109-24987197                      106   5e-24
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     91   3e-19
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   5.2  
04_01_0359 + 4711289-4713052,4713423-4713950                           26   9.1  
01_03_0147 - 13125065-13126679,13126802-13127664                       26   9.1  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  107 bits (258), Expect = 2e-24
 Identities = 48/77 (62%), Positives = 58/77 (75%)
 Frame = +1

Query: 28  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 207
           +VTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+R+
Sbjct: 16  VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRS 75

Query: 208 VPFXXXXXXXXXXNDEK 258
           VP           NDE+
Sbjct: 76  VPRRVRVRIARRRNDEE 92


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  106 bits (255), Expect = 5e-24
 Identities = 47/79 (59%), Positives = 58/79 (73%)
 Frame = +1

Query: 22  KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGV 201
           + +VTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +LNK +WS G+
Sbjct: 12  EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGI 71

Query: 202 RNVPFXXXXXXXXXXNDEK 258
           R+VP           NDE+
Sbjct: 72  RSVPRRVRVRIARKRNDEE 90


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 91.1 bits (216), Expect = 3e-19
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 18/104 (17%)
 Frame = +1

Query: 1   KKRQISHKR--IVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKF 126
           KKR    ++  +VTREYT+NLHKRLHG                  FKK+AP AIKEIRKF
Sbjct: 4   KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63

Query: 127 AEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDEK 258
           A+K MGT DIR+D +LNK +W+ G+R+VP           NDE+
Sbjct: 64  AQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEE 107


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 49  VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 153
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>04_01_0359 + 4711289-4713052,4713423-4713950
          Length = 763

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 210 NISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCSW 97
           NI    R  +F+ A  Y ++    L+F+  SD F   W
Sbjct: 48  NILQCQRVSDFLIAMAYFSIPLELLYFATCSDLFPLKW 85


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 209 TFLTPLDQRNLFKRVSTRMSGVPICFS 129
           ++LT L  RNL + +  R +G P C++
Sbjct: 481 SYLTDLISRNLIQALHLRHNGTPSCYT 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,091,262
Number of Sequences: 37544
Number of extensions: 158535
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)