Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30847
         (386 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113508-1|AAM29513.1|  124|Drosophila melanogaster RE59131p pro...   110   7e-25
AE013599-889|AAM71074.1|  124|Drosophila melanogaster CG1821-PC,...   110   7e-25
AE013599-888|AAF58920.1|  124|Drosophila melanogaster CG1821-PB,...   110   7e-25
AE013599-887|AAM71073.1|  124|Drosophila melanogaster CG1821-PA,...   110   7e-25

>AY113508-1|AAM29513.1|  124|Drosophila melanogaster RE59131p
           protein.
          Length = 124

 Score =  110 bits (264), Expect = 7e-25
 Identities = 47/77 (61%), Positives = 61/77 (79%)
 Frame = +1

Query: 28  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 207
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 208 VPFXXXXXXXXXXNDEK 258
            PF          ND++
Sbjct: 77  TPFRIRVRLARRRNDDE 93



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 255 EDSAHKLFTLVTYVPVASIKGLQTENVDASQE 350
           EDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 93  EDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


>AE013599-889|AAM71074.1|  124|Drosophila melanogaster CG1821-PC,
           isoform C protein.
          Length = 124

 Score =  110 bits (264), Expect = 7e-25
 Identities = 47/77 (61%), Positives = 61/77 (79%)
 Frame = +1

Query: 28  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 207
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 208 VPFXXXXXXXXXXNDEK 258
            PF          ND++
Sbjct: 77  TPFRIRVRLARRRNDDE 93



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 255 EDSAHKLFTLVTYVPVASIKGLQTENVDASQE 350
           EDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 93  EDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


>AE013599-888|AAF58920.1|  124|Drosophila melanogaster CG1821-PB,
           isoform B protein.
          Length = 124

 Score =  110 bits (264), Expect = 7e-25
 Identities = 47/77 (61%), Positives = 61/77 (79%)
 Frame = +1

Query: 28  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 207
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 208 VPFXXXXXXXXXXNDEK 258
            PF          ND++
Sbjct: 77  TPFRIRVRLARRRNDDE 93



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 255 EDSAHKLFTLVTYVPVASIKGLQTENVDASQE 350
           EDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 93  EDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


>AE013599-887|AAM71073.1|  124|Drosophila melanogaster CG1821-PA,
           isoform A protein.
          Length = 124

 Score =  110 bits (264), Expect = 7e-25
 Identities = 47/77 (61%), Positives = 61/77 (79%)
 Frame = +1

Query: 28  IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRN 207
           +VTRE T++L KR+H +GFKKRAPRAIKEIRKFAE++MGT D+R+DTRLNK +WSKG+R+
Sbjct: 17  VVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRS 76

Query: 208 VPFXXXXXXXXXXNDEK 258
            PF          ND++
Sbjct: 77  TPFRIRVRLARRRNDDE 93



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 255 EDSAHKLFTLVTYVPVASIKGLQTENVDASQE 350
           EDS +KL+T VTYVPV++ K LQTENV++S +
Sbjct: 93  EDSPNKLYTYVTYVPVSTFKNLQTENVESSDD 124


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,258
Number of Sequences: 53049
Number of extensions: 284743
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)